Variant report

Variant	rs9471004
Chromosome Location	chr6:39181428-39181429
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:39178389..39182010-chr6:39186397..39189185,3	MCF-7	breast:
2	chr6:39162734..39164328-chr6:39181033..39182674,2	K562	blood:
3	chr6:39177427..39182769-chr6:39182785..39188256,10	K562	blood:
4	chr6:39167002..39169864-chr6:39179599..39183167,3	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2395715	1.00[CEU][hapmap]
rs9462488	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs9462508	1.00[CEU][hapmap]
rs9462518	1.00[CEU][hapmap]
rs9462521	1.00[CEU][hapmap]
rs9471011	1.00[CEU][hapmap]
rs9471056	1.00[CEU][hapmap]
rs9471091	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830644	chr6:39116530-39325980	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1022974	chr6:39120271-39277553	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39150600-39193800	Genic enhancers	Fetal Intestine Small	intestine
2	chr6:39156800-39193400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr6:39163800-39192800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr6:39169400-39193600	Enhancers	Liver	Liver
5	chr6:39174200-39195000	Enhancers	Stomach Mucosa	stomach
6	chr6:39177600-39182200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:39177600-39182800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:39177600-39186400	Weak transcription	Primary T cells from cord blood	blood
9	chr6:39177800-39182200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:39177800-39183400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:39178000-39182000	Weak transcription	Fetal Kidney	kidney
12	chr6:39178000-39183400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:39178000-39193400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:39178200-39181800	Weak transcription	Placenta	Placenta
15	chr6:39178200-39182800	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr6:39178200-39183000	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr6:39178200-39184400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:39178200-39185000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr6:39178200-39185000	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr6:39178200-39185200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr6:39178200-39186600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:39178400-39181800	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr6:39178400-39182000	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr6:39178400-39182600	Weak transcription	Hela-S3	cervix
25	chr6:39178400-39185000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr6:39178400-39185200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:39178600-39181800	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr6:39178600-39182000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr6:39178600-39193200	Weak transcription	Thymus	Thymus
30	chr6:39178800-39182000	Weak transcription	Colonic Mucosa	Colon
31	chr6:39178800-39184800	Genic enhancers	Fetal Intestine Large	intestine
32	chr6:39179000-39186200	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr6:39179000-39186800	Genic enhancers	Fetal Thymus	thymus
34	chr6:39179200-39181800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr6:39179200-39181800	Strong transcription	K562	blood
36	chr6:39179200-39182000	Weak transcription	Lung	lung
37	chr6:39179200-39183000	Weak transcription	GM12878-XiMat	blood
38	chr6:39179200-39183200	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr6:39179200-39184400	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr6:39179200-39186200	Weak transcription	Small Intestine	intestine
41	chr6:39179400-39182000	Weak transcription	Gastric	stomach
42	chr6:39179400-39182200	Weak transcription	Fetal Lung	lung
43	chr6:39180000-39181600	Enhancers	Primary monocytes fromperipheralblood	blood
44	chr6:39180000-39184000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr6:39180000-39184600	Strong transcription	Fetal Stomach	stomach
46	chr6:39180200-39182200	Genic enhancers	Pancreas	Pancrea
47	chr6:39180200-39184200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr6:39180200-39184600	Genic enhancers	Duodenum Mucosa	Duodenum
49	chr6:39180400-39181600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr6:39180400-39182000	Weak transcription	Ovary	ovary

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