Variant report

Variant	rs9471020
Chromosome Location	chr6:39211432-39211433
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2395715	0.86[ASN][1000 genomes]
rs73731732	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73731738	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9471026	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830644	chr6:39116530-39325980	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1022974	chr6:39120271-39277553	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39207400-39211600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:39208800-39211600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:39208800-39211600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:39208800-39211600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:39208800-39215000	Weak transcription	Fetal Intestine Small	intestine
6	chr6:39209000-39211600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:39210800-39211800	Enhancers	K562	blood
8	chr6:39210800-39212400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr6:39211000-39211800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:39211000-39212000	Enhancers	Esophagus	oesophagus
11	chr6:39211200-39211600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:39211200-39211800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr6:39211200-39212000	Enhancers	Placenta	Placenta
14	chr6:39211200-39212600	Enhancers	HMEC	breast
15	chr6:39211400-39211600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:39211400-39212000	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr6:39211400-39212000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:39211400-39212400	Enhancers	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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