Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1109772	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11751171	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11751173	1.00[ASN][1000 genomes]
rs11751627	0.89[AMR][1000 genomes]
rs11751657	1.00[ASN][1000 genomes]
rs11752800	1.00[CHB][hapmap]
rs11753468	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11755807	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11755830	1.00[ASN][1000 genomes]
rs11755884	1.00[ASN][1000 genomes]
rs11756311	0.89[AMR][1000 genomes]
rs12194060	1.00[CHB][hapmap]
rs1546911	1.00[CHB][hapmap]
rs16891904	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16892032	1.00[JPT][hapmap]
rs2758911	1.00[JPT][hapmap]
rs28520677	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41273126	1.00[AMR][1000 genomes]
rs61750316	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61751240	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9462521	1.00[JPT][hapmap]
rs9471056	1.00[JPT][hapmap]
rs9471115	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830644	chr6:39116530-39325980	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv830645	chr6:39227601-39408310	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv533806	chr6:39270073-39397337	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39283000-39295400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:39285600-39307800	Weak transcription	Esophagus	oesophagus
3	chr6:39288600-39298000	Weak transcription	Right Atrium	heart
4	chr6:39290800-39296400	Weak transcription	Lung	lung
5	chr6:39291000-39296200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:39291000-39296400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:39291400-39291800	Enhancers	Pancreatic Islets	Pancreatic Islet

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