Variant report

Variant	rs61751240
Chromosome Location	chr6:39286820-39286821
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1109772	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751171	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751173	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751627	0.89[AMR][1000 genomes]
rs11751657	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753468	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11755807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755830	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755884	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11756311	0.89[AMR][1000 genomes]
rs11758434	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16891904	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28520677	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41273126	1.00[AMR][1000 genomes]
rs61750316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830644	chr6:39116530-39325980	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv830645	chr6:39227601-39408310	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv533806	chr6:39270073-39397337	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39282400-39287200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:39282400-39287200	Weak transcription	Pancreas	Pancrea
3	chr6:39282400-39287400	Weak transcription	Aorta	Aorta
4	chr6:39282800-39291000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:39283000-39290400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr6:39283000-39295400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:39283400-39291000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:39284400-39287600	Weak transcription	Fetal Thymus	thymus
9	chr6:39285600-39307800	Weak transcription	Esophagus	oesophagus
10	chr6:39286400-39290800	Enhancers	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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