Variant report

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:39194267..39198294-chr6:39269067..39272722,11	MCF-7	breast:
2	chr6:39195692..39197449-chr6:39269693..39272549,3	K562	blood:
3	chr6:39196808..39198148-chr6:39270556..39272083,10	MCF-7	breast:
4	chr6:39195179..39198442-chr6:39267374..39272549,7	K562	blood:
5	chr6:39153346..39156056-chr6:39270382..39273616,3	K562	blood:
6	chr6:39157672..39158680-chr6:39270783..39271927,3	MCF-7	breast:
7	chr6:39074321..39077012-chr6:39271539..39273680,2	MCF-7	breast:
8	chr6:39133828..39135626-chr6:39269069..39271952,36	K562	blood:
9	chr6:39146215..39148913-chr6:39269564..39272045,2	MCF-7	breast:
10	chr6:39133802..39135109-chr6:39270035..39271889,35	MCF-7	breast:
11	chr6:39131553..39138589-chr6:39265255..39275264,18	MCF-7	breast:
12	chr6:39235849..39239507-chr6:39267408..39272188,7	MCF-7	breast:
13	chr6:39154173..39155788-chr6:39270095..39272270,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000164626	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11751171	1.00[AMR][1000 genomes]
rs11751341	0.88[EUR][1000 genomes]
rs11751627	0.89[AMR][1000 genomes]
rs11752926	1.00[AFR][1000 genomes]
rs11753468	1.00[AMR][1000 genomes]
rs11754034	1.00[EUR][1000 genomes]
rs11754923	0.83[EUR][1000 genomes]
rs11755807	1.00[AMR][1000 genomes]
rs11756311	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11756986	0.88[EUR][1000 genomes]
rs11756995	0.88[EUR][1000 genomes]
rs11757188	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11758171	0.88[EUR][1000 genomes]
rs11758179	0.88[EUR][1000 genomes]
rs11758204	0.88[EUR][1000 genomes]
rs11758434	1.00[AMR][1000 genomes]
rs11759193	0.88[EUR][1000 genomes]
rs11759227	0.88[EUR][1000 genomes]
rs11759426	0.88[EUR][1000 genomes]
rs11759430	0.88[EUR][1000 genomes]
rs11759604	0.88[EUR][1000 genomes]
rs11759637	0.88[EUR][1000 genomes]
rs11759639	0.88[EUR][1000 genomes]
rs11759887	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs28520677	1.00[AMR][1000 genomes]
rs61750316	1.00[AMR][1000 genomes]
rs61751240	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830644	chr6:39116530-39325980	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1022974	chr6:39120271-39277553	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv830645	chr6:39227601-39408310	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv533806	chr6:39270073-39397337	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39265600-39280800	Weak transcription	Right Atrium	heart
2	chr6:39270400-39272800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:39271000-39275000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:39271000-39278800	Weak transcription	Fetal Thymus	thymus
5	chr6:39271200-39272600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:39271400-39272000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:39271600-39272800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:39271800-39272600	Weak transcription	Colonic Mucosa	Colon

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