Variant report

Variant	rs11752800
Chromosome Location	chr6:39193418-39193419
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:39192543..39195270-chr6:39259985..39261560,2	K562	blood:
2	chr6:39145278..39148548-chr6:39191713..39196059,4	K562	blood:
3	chr6:39162719..39164812-chr6:39191321..39194021,2	K562	blood:
4	chr6:39156367..39160126-chr6:39192413..39195568,3	K562	blood:
5	chr6:39152522..39154314-chr6:39191338..39193640,2	MCF-7	breast:
6	chr6:39186069..39188057-chr6:39192184..39193839,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1109772	1.00[CHB][hapmap]
rs11751171	1.00[CHB][hapmap]
rs11755807	1.00[CHB][hapmap]
rs11758434	1.00[CHB][hapmap]
rs12194060	1.00[CHB][hapmap]
rs16891904	1.00[CHB][hapmap]
rs2815124	0.83[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830644	chr6:39116530-39325980	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1022974	chr6:39120271-39277553	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39150600-39193800	Genic enhancers	Fetal Intestine Small	intestine
2	chr6:39169400-39193600	Enhancers	Liver	Liver
3	chr6:39174200-39195000	Enhancers	Stomach Mucosa	stomach
4	chr6:39182200-39195200	Enhancers	Fetal Lung	lung
5	chr6:39185000-39194400	Enhancers	Ovary	ovary
6	chr6:39186000-39193800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:39186000-39193800	Genic enhancers	Fetal Intestine Large	intestine
8	chr6:39186200-39195000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:39188800-39195000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:39189400-39194200	Transcr. at gene 5' and 3'	K562	blood
11	chr6:39189600-39194600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:39189800-39195400	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr6:39190000-39195600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:39190800-39193600	Weak transcription	A549	lung
15	chr6:39190800-39194000	Enhancers	Small Intestine	intestine
16	chr6:39191000-39195000	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr6:39191200-39193600	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr6:39191400-39196000	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr6:39191600-39193800	Genic enhancers	HUES64 Cell Line	embryonic stem cell
20	chr6:39191600-39193800	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr6:39191600-39193800	Weak transcription	Esophagus	oesophagus
22	chr6:39191800-39194000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:39191800-39194400	Weak transcription	Fetal Kidney	kidney
24	chr6:39191800-39194800	Enhancers	H9 Cell Line	embryonic stem cell
25	chr6:39192000-39194200	Enhancers	Adipose Nuclei	Adipose
26	chr6:39192000-39195600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr6:39192200-39194000	Flanking Active TSS	Duodenum Mucosa	Duodenum
28	chr6:39192200-39194200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:39192200-39195000	Enhancers	Placenta	Placenta
30	chr6:39192200-39195200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr6:39192200-39196000	Enhancers	Primary hematopoietic stem cells	blood
32	chr6:39192400-39194000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr6:39192400-39194000	Enhancers	Spleen	Spleen
34	chr6:39192400-39195200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr6:39192400-39195400	Enhancers	Primary T cells fromperipheralblood	blood
36	chr6:39192600-39194200	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr6:39192600-39194600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
38	chr6:39192600-39195000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr6:39192800-39193600	Enhancers	Lung	lung
40	chr6:39192800-39193800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr6:39192800-39193800	Genic enhancers	Fetal Thymus	thymus
42	chr6:39192800-39194200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr6:39192800-39195000	Enhancers	Colonic Mucosa	Colon
44	chr6:39192800-39195000	Active TSS	Rectal Smooth Muscle	rectum
45	chr6:39193000-39193600	Genic enhancers	H1 Cell Line	embryonic stem cell
46	chr6:39193000-39195400	Enhancers	Primary B cells from cord blood	blood
47	chr6:39193000-39195600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr6:39193200-39193600	Enhancers	Gastric	stomach
49	chr6:39193200-39193600	Enhancers	GM12878-XiMat	blood
50	chr6:39193200-39193800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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