Variant report

Variant	rs12194060
Chromosome Location	chr6:39347488-39347489
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1109772	1.00[CHB][hapmap]
rs11751171	1.00[CHB][hapmap]
rs11752800	1.00[CHB][hapmap]
rs11755807	1.00[CHB][hapmap]
rs11758434	1.00[CHB][hapmap]
rs1546911	1.00[CHB][hapmap]
rs16891904	1.00[CHB][hapmap]
rs9471115	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830645	chr6:39227601-39408310	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv533806	chr6:39270073-39397337	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv885822	chr6:39327708-39721216	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39345200-39347600	Enhancers	Fetal Stomach	stomach
2	chr6:39345400-39347800	Enhancers	Pancreas	Pancrea
3	chr6:39345400-39348400	Enhancers	Fetal Lung	lung
4	chr6:39345800-39349600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:39346200-39355200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr6:39346400-39352800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:39346400-39355000	Weak transcription	Brain Substantia Nigra	brain
8	chr6:39346400-39356800	Weak transcription	Fetal Kidney	kidney
9	chr6:39346600-39355200	Weak transcription	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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