Variant report

Variant	rs11758299
Chromosome Location	chr6:140685414-140685415
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1157002	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11754117	0.85[ASN][1000 genomes]
rs2206521	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4441966	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs559657	0.85[ASN][1000 genomes]
rs56025109	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72977965	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72977971	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72977973	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72977992	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72979810	0.92[ASN][1000 genomes]
rs72979820	0.85[ASN][1000 genomes]
rs72979845	0.85[ASN][1000 genomes]
rs9321766	0.85[ASN][1000 genomes]
rs9373271	0.89[EUR][1000 genomes]
rs9399313	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140685000-140685600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:140685000-140685600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:140685000-140685600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:140685000-140685800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:140685000-140685800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:140685000-140686000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
7	chr6:140685400-140685800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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