Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11758299	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17214668	1.00[CHB][hapmap]
rs17757864	0.85[ASN][1000 genomes]
rs201279	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2206521	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4441966	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4896505	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4896506	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs496953	0.85[ASN][1000 genomes]
rs559657	1.00[ASN][1000 genomes]
rs56025109	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72975808	0.85[ASN][1000 genomes]
rs72975814	0.81[ASN][1000 genomes]
rs72977965	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72977971	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72977973	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72977992	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs924090	0.92[ASN][1000 genomes]
rs9321766	1.00[ASN][1000 genomes]
rs9373271	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9399313	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140632800-140639800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr6:140634600-140638800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr6:140636000-140637800	Strong transcription	Placenta	Placenta
4	chr6:140636400-140636800	Enhancers	Liver	Liver

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