Variant report

Variant	rs201279
Chromosome Location	chr6:140495398-140495399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140494924..140496945-chr6:140505930..140507735,2	K562	blood:
2	chr6:139695739..139698033-chr6:140494036..140495935,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10499217	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10499218	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11751210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11753982	0.88[EUR][1000 genomes]
rs11754152	0.89[EUR][1000 genomes]
rs11754864	0.89[EUR][1000 genomes]
rs11755397	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11756192	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11758188	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs11758612	0.89[EUR][1000 genomes]
rs11758718	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759030	0.89[EUR][1000 genomes]
rs1324127	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1324129	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13437498	0.88[EUR][1000 genomes]
rs1361247	0.89[EUR][1000 genomes]
rs1582145	0.89[EUR][1000 genomes]
rs17069692	0.89[EUR][1000 genomes]
rs17214668	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17755520	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs17755892	0.89[EUR][1000 genomes]
rs17756503	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17756562	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17756688	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17757864	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17811661	0.88[EUR][1000 genomes]
rs17811691	0.88[EUR][1000 genomes]
rs17811871	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs17812354	0.89[EUR][1000 genomes]
rs17812384	0.89[EUR][1000 genomes]
rs17812480	0.89[EUR][1000 genomes]
rs17812617	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs17812647	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs17812736	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1933741	0.88[EUR][1000 genomes]
rs201280	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2201600	0.81[EUR][1000 genomes]
rs35441484	0.89[EUR][1000 genomes]
rs477737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4895580	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs4895581	0.83[EUR][1000 genomes]
rs4896502	0.88[EUR][1000 genomes]
rs4896504	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4896505	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4896506	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4896507	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs496953	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55732492	0.88[EUR][1000 genomes]
rs55738757	0.89[EUR][1000 genomes]
rs55834276	0.89[EUR][1000 genomes]
rs55902158	0.82[EUR][1000 genomes]
rs55907136	0.89[EUR][1000 genomes]
rs56022257	0.88[EUR][1000 genomes]
rs56030520	0.89[EUR][1000 genomes]
rs56202454	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56296431	0.89[EUR][1000 genomes]
rs58650930	0.87[EUR][1000 genomes]
rs593265	0.88[EUR][1000 genomes]
rs59665575	0.88[EUR][1000 genomes]
rs597854	0.88[EUR][1000 genomes]
rs608185	0.88[EUR][1000 genomes]
rs615587	0.88[EUR][1000 genomes]
rs638899	0.88[EUR][1000 genomes]
rs645740	0.88[EUR][1000 genomes]
rs656337	0.88[EUR][1000 genomes]
rs656363	0.88[EUR][1000 genomes]
rs657276	0.88[EUR][1000 genomes]
rs659714	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs661507	0.88[EUR][1000 genomes]
rs671038	0.88[EUR][1000 genomes]
rs6925609	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72975808	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72975814	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72988718	0.89[EUR][1000 genomes]
rs72988720	0.88[EUR][1000 genomes]
rs72988721	0.89[EUR][1000 genomes]
rs72988724	0.85[EUR][1000 genomes]
rs72988734	0.89[EUR][1000 genomes]
rs72988736	0.82[EUR][1000 genomes]
rs72988741	0.89[EUR][1000 genomes]
rs72988750	0.89[EUR][1000 genomes]
rs72988752	0.88[EUR][1000 genomes]
rs72988753	0.89[EUR][1000 genomes]
rs72988755	0.89[EUR][1000 genomes]
rs72988756	0.89[EUR][1000 genomes]
rs72988758	0.89[EUR][1000 genomes]
rs72988759	0.89[EUR][1000 genomes]
rs72988761	0.89[EUR][1000 genomes]
rs72990622	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72990629	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7769264	0.97[EUR][1000 genomes]
rs924090	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9484333	0.87[EUR][1000 genomes]
rs9495619	0.85[EUR][1000 genomes]
rs9495621	0.88[EUR][1000 genomes]
rs953112	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv886693	chr6:140444057-140578494	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv1825718	chr6:140476088-140584384	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140489000-140495800	Weak transcription	K562	blood
2	chr6:140492600-140495400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:140494800-140497000	Enhancers	NHDF-Ad	bronchial
4	chr6:140495000-140495600	Enhancers	Hela-S3	cervix
5	chr6:140495000-140495600	Enhancers	NHLF	lung
6	chr6:140495000-140495800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr6:140495000-140496200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:140495000-140496800	Enhancers	NHEK	skin
9	chr6:140495000-140496800	Enhancers	Osteobl	bone
10	chr6:140495000-140497000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:140495000-140497000	Enhancers	HMEC	breast
12	chr6:140495000-140497200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:140495000-140497400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:140495200-140495600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:140495200-140495800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:140495200-140496000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:140495200-140497000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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