Variant report

Variant	rs9495619
Chromosome Location	chr6:140295146-140295147
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:139696942..139698780-chr6:140294038..140296688,2	K562	blood:
2	chr6:140289417..140292711-chr6:140293441..140296166,4	K562	blood:

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10499217	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10499218	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11751210	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11753982	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11754152	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754864	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11755397	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11756192	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11758188	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11758612	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11758718	0.88[EUR][1000 genomes]
rs11759030	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1324127	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1324129	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13437498	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1361247	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1582145	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17069446	1.00[JPT][hapmap]
rs17069692	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17214668	1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs17516817	1.00[JPT][hapmap]
rs17755520	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17755892	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17756503	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17756562	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17756688	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17811661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17811691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17811871	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17812354	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17812384	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17812480	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17812617	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17812647	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17812736	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1890428	1.00[JPT][hapmap]
rs1933741	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201279	0.85[EUR][1000 genomes]
rs201280	0.87[EUR][1000 genomes]
rs2144168	1.00[JPT][hapmap]
rs35441484	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs477737	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4895580	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895581	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4896502	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4896504	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4896505	0.83[EUR][1000 genomes]
rs4896506	0.83[EUR][1000 genomes]
rs496953	0.85[EUR][1000 genomes]
rs55732492	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55738757	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55834276	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55902158	0.88[EUR][1000 genomes]
rs55907136	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56022257	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56030520	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56202454	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56296431	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58650930	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs593265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59665575	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs597854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs608185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs615587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs638899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs645740	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs656337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs656363	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs657276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs659714	0.88[EUR][1000 genomes]
rs661507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs671038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6913694	1.00[JPT][hapmap]
rs6925609	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72975808	0.85[EUR][1000 genomes]
rs72975814	0.83[EUR][1000 genomes]
rs72988718	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72988720	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72988721	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72988724	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72988734	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72988736	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72988741	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72988745	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72988750	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72988752	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72988753	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72988755	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72988756	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72988758	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72988759	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72988761	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72990622	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72990629	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7769264	0.88[EUR][1000 genomes]
rs9484333	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9495604	1.00[YRI][hapmap]
rs9495621	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs953112	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140287800-140299000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:140289600-140297200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:140291600-140302000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:140292600-140297000	Weak transcription	Placenta	Placenta
5	chr6:140292600-140306000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:140292800-140295200	Weak transcription	Adipose Nuclei	Adipose
7	chr6:140294200-140296400	Enhancers	Fetal Lung	lung
8	chr6:140294200-140296600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:140294200-140299400	Enhancers	Fetal Heart	heart
10	chr6:140294400-140295200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr6:140294400-140296400	Enhancers	Osteobl	bone
12	chr6:140294600-140295600	Enhancers	NHLF	lung
13	chr6:140294600-140296400	Enhancers	Hela-S3	cervix
14	chr6:140294800-140295200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:140294800-140295200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr6:140294800-140295400	Enhancers	Fetal Stomach	stomach
17	chr6:140294800-140295400	Enhancers	A549	lung
18	chr6:140294800-140295400	Enhancers	NHDF-Ad	bronchial
19	chr6:140294800-140295600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:140294800-140295600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr6:140294800-140295600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:140294800-140295600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:140294800-140295600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:140294800-140295600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr6:140294800-140295600	Active TSS	Right Atrium	heart
26	chr6:140294800-140295800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:140294800-140295800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:140294800-140295800	Enhancers	HUVEC	blood vessel
29	chr6:140294800-140295800	Enhancers	NH-A	brain
30	chr6:140295000-140295200	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr6:140295000-140295200	Active TSS	Stomach Smooth Muscle	stomach
32	chr6:140295000-140295400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:140295000-140295400	Enhancers	Fetal Kidney	kidney
34	chr6:140295000-140295400	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr6:140295000-140295400	Enhancers	HSMMtube	muscle
36	chr6:140295000-140295400	Flanking Active TSS	K562	blood
37	chr6:140295000-140295600	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr6:140295000-140295800	Enhancers	Rectal Smooth Muscle	rectum
39	chr6:140295000-140295800	Enhancers	HSMM	muscle

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