Variant report

Variant	rs17811661
Chromosome Location	chr6:140295661-140295662
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139696942..139698780-chr6:140294038..140296688,2	K562	blood:
2	chr6:140289417..140292711-chr6:140293441..140296166,4	K562	blood:
3	chr6:139697609..139700104-chr6:140295382..140298304,2	MCF-7	breast:

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10499217	0.93[EUR][1000 genomes]
rs10499218	0.92[EUR][1000 genomes]
rs11751210	1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs11753982	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11754152	0.99[EUR][1000 genomes]
rs11754864	0.99[EUR][1000 genomes]
rs11755397	0.96[EUR][1000 genomes]
rs11756192	1.00[JPT][hapmap]
rs11758188	1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11758612	0.99[EUR][1000 genomes]
rs11758718	0.90[EUR][1000 genomes]
rs11759030	0.99[EUR][1000 genomes]
rs1324127	0.90[EUR][1000 genomes]
rs1324129	0.90[EUR][1000 genomes]
rs13437223	1.00[ASN][1000 genomes]
rs13437498	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1361247	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1582145	0.99[EUR][1000 genomes]
rs17069446	1.00[JPT][hapmap]
rs17069692	0.99[EUR][1000 genomes]
rs17214668	1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs17516817	1.00[JPT][hapmap]
rs17755520	1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17755892	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17756503	0.93[EUR][1000 genomes]
rs17756562	0.92[EUR][1000 genomes]
rs17756688	0.92[EUR][1000 genomes]
rs17811691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17811871	1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17812354	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17812384	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17812480	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17812617	1.00[JPT][hapmap];0.97[EUR][1000 genomes]
rs17812647	1.00[JPT][hapmap];0.99[EUR][1000 genomes]
rs17812736	0.96[EUR][1000 genomes]
rs1890428	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1933741	0.97[EUR][1000 genomes]
rs201279	1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs201280	0.89[EUR][1000 genomes]
rs2144168	1.00[JPT][hapmap]
rs35441484	0.99[EUR][1000 genomes]
rs477737	1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs4895578	1.00[ASN][1000 genomes]
rs4895580	1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4895581	0.92[EUR][1000 genomes]
rs4896502	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896504	0.92[EUR][1000 genomes]
rs4896505	0.85[EUR][1000 genomes]
rs4896506	0.85[EUR][1000 genomes]
rs496953	0.88[EUR][1000 genomes]
rs55732492	0.97[EUR][1000 genomes]
rs55738757	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55834276	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55902158	0.91[EUR][1000 genomes]
rs55907136	0.99[EUR][1000 genomes]
rs56022257	0.97[EUR][1000 genomes]
rs56030520	0.99[EUR][1000 genomes]
rs56202454	0.94[EUR][1000 genomes]
rs56296431	0.99[EUR][1000 genomes]
rs58650930	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs593265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59665575	0.97[EUR][1000 genomes]
rs597854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs608185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs615587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs638899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs645740	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs656337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs656363	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs657276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs659714	0.90[EUR][1000 genomes]
rs661507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs671038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913694	1.00[JPT][hapmap]
rs6925609	0.93[EUR][1000 genomes]
rs72975808	0.88[EUR][1000 genomes]
rs72975814	0.85[EUR][1000 genomes]
rs72988718	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72988720	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72988721	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72988724	0.92[EUR][1000 genomes]
rs72988734	0.99[EUR][1000 genomes]
rs72988736	0.92[EUR][1000 genomes]
rs72988741	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72988745	0.89[EUR][1000 genomes]
rs72988750	0.99[EUR][1000 genomes]
rs72988752	0.97[EUR][1000 genomes]
rs72988753	0.99[EUR][1000 genomes]
rs72988755	0.99[EUR][1000 genomes]
rs72988756	0.99[EUR][1000 genomes]
rs72988758	0.99[EUR][1000 genomes]
rs72988759	0.99[EUR][1000 genomes]
rs72988761	0.99[EUR][1000 genomes]
rs72990622	0.93[EUR][1000 genomes]
rs72990629	0.93[EUR][1000 genomes]
rs7769264	0.90[EUR][1000 genomes]
rs9484333	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9495604	1.00[YRI][hapmap]
rs9495609	1.00[ASN][1000 genomes]
rs9495610	1.00[ASN][1000 genomes]
rs9495619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9495621	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs953112	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140287800-140299000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:140289600-140297200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:140291600-140302000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:140292600-140297000	Weak transcription	Placenta	Placenta
5	chr6:140292600-140306000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:140294200-140296400	Enhancers	Fetal Lung	lung
7	chr6:140294200-140296600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:140294200-140299400	Enhancers	Fetal Heart	heart
9	chr6:140294400-140296400	Enhancers	Osteobl	bone
10	chr6:140294600-140296400	Enhancers	Hela-S3	cervix
11	chr6:140294800-140295800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:140294800-140295800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:140294800-140295800	Enhancers	HUVEC	blood vessel
14	chr6:140294800-140295800	Enhancers	NH-A	brain
15	chr6:140295000-140295800	Enhancers	Rectal Smooth Muscle	rectum
16	chr6:140295000-140295800	Enhancers	HSMM	muscle
17	chr6:140295200-140296600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:140295200-140299000	Weak transcription	Colon Smooth Muscle	Colon
19	chr6:140295200-140303000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr6:140295400-140295800	Enhancers	K562	blood
21	chr6:140295400-140297000	Weak transcription	NHDF-Ad	bronchial
22	chr6:140295400-140297600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr6:140295400-140298000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:140295400-140298600	Weak transcription	A549	lung
25	chr6:140295400-140298800	Weak transcription	HSMMtube	muscle
26	chr6:140295400-140300400	Weak transcription	Fetal Kidney	kidney
27	chr6:140295400-140300400	Weak transcription	Fetal Stomach	stomach
28	chr6:140295400-140300400	Weak transcription	Stomach Smooth Muscle	stomach
29	chr6:140295400-140301800	Weak transcription	Aorta	Aorta
30	chr6:140295400-140302000	Weak transcription	Adipose Nuclei	Adipose
31	chr6:140295400-140302800	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr6:140295400-140303000	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr6:140295600-140296000	Weak transcription	NHLF	lung
34	chr6:140295600-140296600	Enhancers	Pancreatic Islets	Pancreatic Islet
35	chr6:140295600-140297400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr6:140295600-140298200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:140295600-140298600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr6:140295600-140298800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:140295600-140299000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr6:140295600-140302000	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr6:140295600-140302600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr6:140295600-140303400	Weak transcription	Right Atrium	heart

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