Variant report

Variant	rs11755397
Chromosome Location	chr6:140362365-140362366
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140362168..140365003-chr6:140377211..140380163,3	MCF-7	breast:
2	chr6:140361249..140363028-chr6:140468764..140470326,2	K562	blood:

Extended variants
information (count: 105 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10499217	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10499218	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11751210	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11753982	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11754152	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11754864	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11756192	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11758188	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11758612	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11758718	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11759030	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1324127	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1324129	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13437498	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1361247	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1408295	1.00[GIH][hapmap];0.85[TSI][hapmap]
rs1582145	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17069446	1.00[JPT][hapmap]
rs17069692	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17214668	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17516817	1.00[JPT][hapmap]
rs17755520	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17755892	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17756503	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17756562	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17756688	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17757864	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17811661	0.96[EUR][1000 genomes]
rs17811691	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17811871	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17812354	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17812384	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17812480	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17812617	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17812647	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17812736	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1890428	1.00[JPT][hapmap]
rs1933741	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs201279	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs201280	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2144168	1.00[JPT][hapmap]
rs35441484	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs477737	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4895580	1.00[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4895581	0.91[EUR][1000 genomes]
rs4896502	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs4896504	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4896505	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4896506	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4896507	0.83[EUR][1000 genomes]
rs496953	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55732492	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55738757	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55834276	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55902158	0.89[EUR][1000 genomes]
rs55907136	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56022257	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56030520	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56202454	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56296431	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58650930	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs593265	0.96[EUR][1000 genomes]
rs59665575	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs597854	0.96[EUR][1000 genomes]
rs608185	0.96[EUR][1000 genomes]
rs615587	0.96[EUR][1000 genomes]
rs638899	0.96[EUR][1000 genomes]
rs645740	0.96[EUR][1000 genomes]
rs656337	0.96[EUR][1000 genomes]
rs656363	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs657276	0.96[EUR][1000 genomes]
rs659714	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs661507	0.96[EUR][1000 genomes]
rs671038	0.96[EUR][1000 genomes]
rs6913694	1.00[JPT][hapmap]
rs6925609	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72975808	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72975814	0.89[EUR][1000 genomes]
rs72988718	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72988720	0.96[EUR][1000 genomes]
rs72988721	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72988724	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72988734	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72988736	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72988741	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72988745	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72988750	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72988752	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72988753	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72988755	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72988756	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72988758	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72988759	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72988761	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72990622	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72990629	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7769264	0.94[EUR][1000 genomes]
rs9484333	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9495619	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9495621	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs953112	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1019508	chr6:140317472-140434466	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1022987	chr6:140344229-140463916	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11755397	PBOV1	cis	cerebellum	SCAN

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140351400-140366600	Weak transcription	Aorta	Aorta
2	chr6:140353600-140365600	Weak transcription	Left Ventricle	heart
3	chr6:140357200-140362400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:140358200-140366600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:140360800-140362400	Enhancers	Osteobl	bone
6	chr6:140360800-140366400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr6:140361200-140362800	Enhancers	Colon Smooth Muscle	Colon
8	chr6:140361200-140363000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:140361200-140365400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:140361200-140365800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:140361200-140366800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:140361200-140366800	Enhancers	HMEC	breast
13	chr6:140361200-140367000	Enhancers	NHEK	skin
14	chr6:140361400-140362400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:140361400-140362400	Enhancers	NHDF-Ad	bronchial
16	chr6:140361400-140362600	Enhancers	HSMM	muscle
17	chr6:140361600-140363600	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr6:140361600-140365600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:140362000-140362400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:140362000-140362400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:140362000-140363200	Weak transcription	NHLF	lung
22	chr6:140362200-140362600	Enhancers	Rectal Smooth Muscle	rectum
23	chr6:140362200-140362600	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr6:140362200-140363200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr6:140362200-140363200	Weak transcription	Hela-S3	cervix
26	chr6:140362200-140366400	Weak transcription	Primary neutrophils fromperipheralblood	blood

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