Variant report

Variant	rs13437498
Chromosome Location	chr6:140299690-140299691
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139693777..139697007-chr6:140297471..140300569,5	MCF-7	breast:
2	chr6:139693406..139696942-chr6:140299260..140302508,7	MCF-7	breast:
3	chr6:139695460..139698700-chr6:140298901..140302123,4	K562	blood:
4	chr6:139695460..139697236-chr6:140298539..140301196,4	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10499217	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10499218	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11751210	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11753982	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11754152	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754864	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11755397	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11758188	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11758612	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11758718	0.90[EUR][1000 genomes]
rs11759030	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1324127	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1324129	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1361247	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1582145	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17069692	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17214668	0.88[EUR][1000 genomes]
rs17755520	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17755892	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17756503	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17756562	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17756688	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17811661	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17811691	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17811871	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17812354	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17812384	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17812480	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17812617	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17812647	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17812736	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1933741	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201279	0.88[EUR][1000 genomes]
rs201280	0.89[EUR][1000 genomes]
rs35441484	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs477737	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4895580	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895581	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4896502	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4896504	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4896505	0.85[EUR][1000 genomes]
rs4896506	0.85[EUR][1000 genomes]
rs496953	0.88[EUR][1000 genomes]
rs55732492	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55738757	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55834276	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55902158	0.91[EUR][1000 genomes]
rs55907136	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56022257	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56030520	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56202454	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56296431	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58650930	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs593265	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59665575	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs597854	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs608185	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs615587	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs638899	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs645740	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs656337	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs656363	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs657276	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs659714	0.90[EUR][1000 genomes]
rs661507	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs671038	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6925609	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72975808	0.88[EUR][1000 genomes]
rs72975814	0.85[EUR][1000 genomes]
rs72988718	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72988720	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72988721	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72988724	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72988734	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72988736	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72988741	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72988745	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72988750	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72988752	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72988753	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72988755	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72988756	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72988758	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72988759	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72988761	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72990622	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72990629	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7769264	0.90[EUR][1000 genomes]
rs9484333	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9495619	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9495621	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs953112	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140291600-140302000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:140292600-140306000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:140295200-140303000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:140295400-140300400	Weak transcription	Fetal Kidney	kidney
5	chr6:140295400-140300400	Weak transcription	Fetal Stomach	stomach
6	chr6:140295400-140300400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:140295400-140301800	Weak transcription	Aorta	Aorta
8	chr6:140295400-140302000	Weak transcription	Adipose Nuclei	Adipose
9	chr6:140295400-140302800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:140295400-140303000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr6:140295600-140302000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:140295600-140302600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:140295600-140303400	Weak transcription	Right Atrium	heart
14	chr6:140296400-140302600	Weak transcription	Fetal Lung	lung
15	chr6:140297000-140301800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:140297400-140305800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:140298200-140300600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:140298200-140300600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:140298200-140300600	Weak transcription	Left Ventricle	heart
20	chr6:140298200-140303000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:140298200-140303000	Weak transcription	Pancreas	Pancrea
22	chr6:140298200-140305600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:140298200-140306200	Enhancers	Hela-S3	cervix
24	chr6:140298400-140300800	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr6:140298600-140301400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:140298800-140299800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:140298800-140305800	Enhancers	Osteobl	bone
28	chr6:140298800-140306000	Enhancers	NHLF	lung
29	chr6:140299000-140300600	Weak transcription	Placenta	Placenta
30	chr6:140299200-140302000	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr6:140299400-140300400	Weak transcription	Fetal Heart	heart
32	chr6:140299400-140300600	Weak transcription	K562	blood
33	chr6:140299400-140300600	Weak transcription	NH-A	brain
34	chr6:140299400-140301200	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr6:140299400-140301200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
36	chr6:140299400-140301600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr6:140299400-140301600	Weak transcription	Fetal Intestine Small	intestine
38	chr6:140299400-140301800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr6:140299400-140301800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr6:140299400-140301800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr6:140299400-140301800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr6:140299400-140301800	Weak transcription	Ovary	ovary
43	chr6:140299400-140301800	Weak transcription	HMEC	breast
44	chr6:140299400-140302600	Weak transcription	Esophagus	oesophagus
45	chr6:140299400-140302800	Weak transcription	HUVEC	blood vessel
46	chr6:140299400-140303000	Weak transcription	Fetal Muscle Leg	muscle
47	chr6:140299400-140303400	Weak transcription	Small Intestine	intestine
48	chr6:140299600-140300400	Weak transcription	Colon Smooth Muscle	Colon
49	chr6:140299600-140300400	Weak transcription	Rectal Smooth Muscle	rectum
50	chr6:140299600-140300400	Weak transcription	HSMMtube	muscle

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