Variant report

Variant	rs593265
Chromosome Location	chr6:140270869-140270870
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10499217	0.93[EUR][1000 genomes]
rs10499218	0.92[EUR][1000 genomes]
rs11751210	0.92[EUR][1000 genomes]
rs11753982	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11754152	0.99[EUR][1000 genomes]
rs11754864	0.99[EUR][1000 genomes]
rs11755397	0.96[EUR][1000 genomes]
rs11758188	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11758612	0.99[EUR][1000 genomes]
rs11758718	0.90[EUR][1000 genomes]
rs11759030	0.99[EUR][1000 genomes]
rs1324127	0.90[EUR][1000 genomes]
rs1324129	0.90[EUR][1000 genomes]
rs13437223	0.83[ASN][1000 genomes]
rs13437498	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1361247	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1582145	0.99[EUR][1000 genomes]
rs17069692	0.99[EUR][1000 genomes]
rs17214668	0.88[EUR][1000 genomes]
rs17755520	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17755892	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17756503	0.93[EUR][1000 genomes]
rs17756562	0.92[EUR][1000 genomes]
rs17756688	0.92[EUR][1000 genomes]
rs17811661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17811691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17811871	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17812354	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17812384	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17812480	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17812617	0.97[EUR][1000 genomes]
rs17812647	0.99[EUR][1000 genomes]
rs17812736	0.96[EUR][1000 genomes]
rs1933741	0.97[EUR][1000 genomes]
rs201279	0.88[EUR][1000 genomes]
rs201280	0.89[EUR][1000 genomes]
rs35441484	0.99[EUR][1000 genomes]
rs477737	0.90[EUR][1000 genomes]
rs4895578	0.83[ASN][1000 genomes]
rs4895580	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4895581	0.92[EUR][1000 genomes]
rs4896502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4896504	0.92[EUR][1000 genomes]
rs55732492	0.97[EUR][1000 genomes]
rs55738757	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55834276	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55902158	0.91[EUR][1000 genomes]
rs55907136	0.99[EUR][1000 genomes]
rs56022257	0.97[EUR][1000 genomes]
rs56030520	0.99[EUR][1000 genomes]
rs56202454	0.94[EUR][1000 genomes]
rs56296431	0.99[EUR][1000 genomes]
rs58650930	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59665575	0.97[EUR][1000 genomes]
rs597854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs608185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs615587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs638899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs645740	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs656337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs656363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs657276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs659714	0.90[EUR][1000 genomes]
rs661507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs671038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6925609	0.93[EUR][1000 genomes]
rs72988718	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72988720	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72988721	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72988724	0.92[EUR][1000 genomes]
rs72988734	0.99[EUR][1000 genomes]
rs72988736	0.92[EUR][1000 genomes]
rs72988741	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72988745	0.89[EUR][1000 genomes]
rs72988750	0.99[EUR][1000 genomes]
rs72988752	0.97[EUR][1000 genomes]
rs72988753	0.99[EUR][1000 genomes]
rs72988755	0.99[EUR][1000 genomes]
rs72988756	0.99[EUR][1000 genomes]
rs72988758	0.99[EUR][1000 genomes]
rs72988759	0.99[EUR][1000 genomes]
rs72988761	0.99[EUR][1000 genomes]
rs72990622	0.93[EUR][1000 genomes]
rs72990629	0.93[EUR][1000 genomes]
rs7769264	0.90[EUR][1000 genomes]
rs9484333	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9495609	0.83[ASN][1000 genomes]
rs9495610	0.83[ASN][1000 genomes]
rs9495619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9495621	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs953112	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140266000-140276000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:140270800-140271000	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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