Variant report

Variant	rs17756503
Chromosome Location	chr6:140367468-140367469
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140363202..140365064-chr6:140365355..140367836,2	MCF-7	breast:

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10499217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10499218	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751210	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11753982	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11754152	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11754864	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11755397	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11756192	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11758188	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11758612	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11758718	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11759030	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1324127	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1324129	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13437498	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1361247	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1408295	1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs1582145	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17069446	1.00[JPT][hapmap]
rs17069692	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17214668	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17516817	1.00[JPT][hapmap]
rs17755520	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17755892	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17756562	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17756688	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17757864	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17811661	0.93[EUR][1000 genomes]
rs17811691	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17811871	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17812354	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17812384	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17812480	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17812617	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17812647	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17812736	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1890428	1.00[JPT][hapmap]
rs1933741	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs201279	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs201280	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2144168	1.00[JPT][hapmap]
rs35441484	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs477737	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4895580	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4895581	0.88[EUR][1000 genomes]
rs4896502	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs4896504	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896505	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4896506	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4896507	0.85[EUR][1000 genomes]
rs496953	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55732492	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55738757	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55834276	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55902158	0.87[EUR][1000 genomes]
rs55907136	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56022257	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56030520	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56202454	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56296431	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58650930	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs593265	0.93[EUR][1000 genomes]
rs59665575	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs597854	0.93[EUR][1000 genomes]
rs608185	0.93[EUR][1000 genomes]
rs615587	0.93[EUR][1000 genomes]
rs638899	0.93[EUR][1000 genomes]
rs645740	0.93[EUR][1000 genomes]
rs656337	0.93[EUR][1000 genomes]
rs656363	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs657276	0.93[EUR][1000 genomes]
rs659714	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs661507	0.93[EUR][1000 genomes]
rs671038	0.93[EUR][1000 genomes]
rs6913694	1.00[JPT][hapmap]
rs6925609	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72975808	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72975814	0.92[EUR][1000 genomes]
rs72988718	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72988720	0.93[EUR][1000 genomes]
rs72988721	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72988724	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72988734	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72988736	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72988741	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72988745	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72988750	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72988752	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72988753	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72988755	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72988756	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72988758	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72988759	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72988761	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72990622	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72990629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7769264	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs924090	0.80[EUR][1000 genomes]
rs9484333	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9495619	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9495621	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs953112	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1019508	chr6:140317472-140434466	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1022987	chr6:140344229-140463916	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv3395457	chr6:140364559-140368757	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140363400-140370800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr6:140363400-140370800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:140364400-140367600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:140365600-140373000	Weak transcription	Fetal Intestine Small	intestine
5	chr6:140365600-140374200	Weak transcription	A549	lung
6	chr6:140365800-140371200	Weak transcription	Osteobl	bone
7	chr6:140366200-140368200	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr6:140366400-140368000	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr6:140366400-140370600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:140366600-140371200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:140366600-140371200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr6:140366600-140372000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:140366800-140369400	Weak transcription	Hela-S3	cervix
14	chr6:140366800-140370200	Weak transcription	Fetal Heart	heart
15	chr6:140366800-140370600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:140366800-140370600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:140366800-140370800	Weak transcription	NH-A	brain
18	chr6:140366800-140371400	Weak transcription	HMEC	breast
19	chr6:140366800-140371400	Weak transcription	NHLF	lung
20	chr6:140366800-140371600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:140366800-140371600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:140366800-140372200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:140367000-140371400	Weak transcription	HSMM	muscle
24	chr6:140367200-140367600	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr6:140367200-140371400	Weak transcription	NHDF-Ad	bronchial
26	chr6:140367400-140367600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr6:140367400-140367600	Enhancers	NHEK	skin
28	chr6:140367400-140370600	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr6:140367400-140370800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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