Variant report

Variant	rs72975808
Chromosome Location	chr6:140506897-140506898
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:140469961..140471694-chr6:140504902..140507388,2	K562	blood:
2	chr6:139737465..139739803-chr6:140504147..140506921,2	K562	blood:
3	chr6:140506139..140508848-chr6:140538738..140540926,2	K562	blood:
4	chr6:140503911..140507978-chr6:140508654..140513269,4	K562	blood:
5	chr6:140506210..140508246-chr6:140511712..140513687,2	K562	blood:
6	chr6:140481943..140484484-chr6:140504896..140507347,2	K562	blood:
7	chr6:140499649..140502750-chr6:140506344..140509801,3	K562	blood:
8	chr6:140505744..140507717-chr6:140517169..140519648,2	K562	blood:
9	chr6:140494924..140496945-chr6:140505930..140507735,2	K562	blood:

No data

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10499217	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10499218	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1157002	0.85[ASN][1000 genomes]
rs11751210	0.93[EUR][1000 genomes]
rs11753982	0.88[EUR][1000 genomes]
rs11754152	0.89[EUR][1000 genomes]
rs11754864	0.89[EUR][1000 genomes]
rs11755397	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11758188	0.89[EUR][1000 genomes]
rs11758612	0.89[EUR][1000 genomes]
rs11758718	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11759030	0.89[EUR][1000 genomes]
rs1324127	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1324129	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13437498	0.88[EUR][1000 genomes]
rs1361247	0.89[EUR][1000 genomes]
rs1582145	0.89[EUR][1000 genomes]
rs17069692	0.89[EUR][1000 genomes]
rs17214668	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17755520	0.89[EUR][1000 genomes]
rs17755892	0.89[EUR][1000 genomes]
rs17756503	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17756562	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17756688	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17757864	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17811661	0.88[EUR][1000 genomes]
rs17811691	0.88[EUR][1000 genomes]
rs17811871	0.89[EUR][1000 genomes]
rs17812354	0.89[EUR][1000 genomes]
rs17812384	0.89[EUR][1000 genomes]
rs17812480	0.89[EUR][1000 genomes]
rs17812617	0.88[EUR][1000 genomes]
rs17812647	0.89[EUR][1000 genomes]
rs17812736	0.92[EUR][1000 genomes]
rs1933741	0.88[EUR][1000 genomes]
rs201279	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs201280	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2201600	0.81[EUR][1000 genomes]
rs35441484	0.89[EUR][1000 genomes]
rs477737	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4895580	0.88[EUR][1000 genomes]
rs4895581	0.83[EUR][1000 genomes]
rs4896502	0.88[EUR][1000 genomes]
rs4896504	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4896505	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896506	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896507	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs496953	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55732492	0.88[EUR][1000 genomes]
rs55738757	0.89[EUR][1000 genomes]
rs55834276	0.89[EUR][1000 genomes]
rs55902158	0.82[EUR][1000 genomes]
rs55907136	0.89[EUR][1000 genomes]
rs559657	0.85[ASN][1000 genomes]
rs56022257	0.88[EUR][1000 genomes]
rs56030520	0.89[EUR][1000 genomes]
rs56202454	0.90[EUR][1000 genomes]
rs56296431	0.89[EUR][1000 genomes]
rs58650930	0.87[EUR][1000 genomes]
rs59665575	0.88[EUR][1000 genomes]
rs597854	0.88[EUR][1000 genomes]
rs615587	0.88[EUR][1000 genomes]
rs645740	0.88[EUR][1000 genomes]
rs659714	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs661507	0.88[EUR][1000 genomes]
rs6925609	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72975814	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72988718	0.89[EUR][1000 genomes]
rs72988720	0.88[EUR][1000 genomes]
rs72988721	0.89[EUR][1000 genomes]
rs72988724	0.85[EUR][1000 genomes]
rs72988734	0.89[EUR][1000 genomes]
rs72988736	0.82[EUR][1000 genomes]
rs72988741	0.89[EUR][1000 genomes]
rs72988750	0.89[EUR][1000 genomes]
rs72988752	0.88[EUR][1000 genomes]
rs72988753	0.89[EUR][1000 genomes]
rs72988755	0.89[EUR][1000 genomes]
rs72988756	0.89[EUR][1000 genomes]
rs72988758	0.89[EUR][1000 genomes]
rs72988759	0.89[EUR][1000 genomes]
rs72988761	0.89[EUR][1000 genomes]
rs72990622	0.89[EUR][1000 genomes]
rs72990629	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7769264	0.97[EUR][1000 genomes]
rs924090	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9321766	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9484333	0.87[EUR][1000 genomes]
rs9495619	0.85[EUR][1000 genomes]
rs9495621	0.88[EUR][1000 genomes]
rs953112	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv886693	chr6:140444057-140578494	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv1825718	chr6:140476088-140584384	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140497000-140516400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:140505800-140513000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:140506000-140508400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
4	chr6:140506000-140511200	Weak transcription	Ovary	ovary
5	chr6:140506200-140508800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell

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