Variant report

Variant	rs17757864
Chromosome Location	chr6:140557978-140557979
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140557553..140560335-chr6:140562655..140564870,3	K562	blood:

Extended variants
information (count: 74 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10499217	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10499218	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1157002	0.85[ASN][1000 genomes]
rs11751210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs11753982	0.80[EUR][1000 genomes]
rs11754152	0.81[EUR][1000 genomes]
rs11754864	0.81[EUR][1000 genomes]
rs11755397	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11758612	0.81[EUR][1000 genomes]
rs11758718	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11759030	0.81[EUR][1000 genomes]
rs1324127	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1324129	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1361247	0.81[EUR][1000 genomes]
rs1408295	1.00[GIH][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap]
rs1582145	0.81[EUR][1000 genomes]
rs17069692	0.81[EUR][1000 genomes]
rs17214668	1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17755892	0.81[EUR][1000 genomes]
rs17756503	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17756562	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17756688	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17812354	0.81[EUR][1000 genomes]
rs17812384	0.81[EUR][1000 genomes]
rs17812480	0.81[EUR][1000 genomes]
rs17812617	0.80[EUR][1000 genomes]
rs17812647	0.81[EUR][1000 genomes]
rs17812736	0.84[EUR][1000 genomes]
rs1933741	0.80[EUR][1000 genomes]
rs201279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs201280	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2201600	0.89[EUR][1000 genomes]
rs35441484	0.81[EUR][1000 genomes]
rs477737	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4896504	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4896505	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896506	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896507	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs496953	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55732492	0.80[EUR][1000 genomes]
rs55738757	0.81[EUR][1000 genomes]
rs55834276	0.81[EUR][1000 genomes]
rs55907136	0.81[EUR][1000 genomes]
rs559657	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56022257	0.80[EUR][1000 genomes]
rs56030520	0.81[EUR][1000 genomes]
rs56202454	0.83[EUR][1000 genomes]
rs56296431	0.81[EUR][1000 genomes]
rs59665575	0.80[EUR][1000 genomes]
rs659714	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6925609	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72975808	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72975814	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72988734	0.81[EUR][1000 genomes]
rs72988741	0.81[EUR][1000 genomes]
rs72988750	0.81[EUR][1000 genomes]
rs72988752	0.80[EUR][1000 genomes]
rs72988753	0.81[EUR][1000 genomes]
rs72988755	0.81[EUR][1000 genomes]
rs72988756	0.81[EUR][1000 genomes]
rs72988758	0.81[EUR][1000 genomes]
rs72988759	0.81[EUR][1000 genomes]
rs72988761	0.81[EUR][1000 genomes]
rs72990622	0.82[EUR][1000 genomes]
rs72990629	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7769264	0.89[EUR][1000 genomes]
rs924090	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9321766	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs953112	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv886693	chr6:140444057-140578494	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv1825718	chr6:140476088-140584384	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17757864	PBOV1	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140557600-140558400	Enhancers	Fetal Lung	lung
2	chr6:140557600-140558400	Enhancers	Fetal Stomach	stomach
3	chr6:140557600-140558800	Enhancers	Fetal Kidney	kidney
4	chr6:140557800-140558600	Enhancers	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links