Variant report
| Variant | rs11758620 |
|---|---|
| Chromosome Location | chr6:161329767-161329768 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000220913 | Chromatin interaction |
| ENSG00000224371 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs11751714 | 1.00[ASN][1000 genomes] |
| rs11751813 | 1.00[ASN][1000 genomes] |
| rs11752957 | 1.00[ASN][1000 genomes] |
| rs11753115 | 0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11754459 | 1.00[ASN][1000 genomes] |
| rs11755099 | 1.00[ASN][1000 genomes] |
| rs11758427 | 1.00[ASN][1000 genomes] |
| rs11759366 | 1.00[ASN][1000 genomes] |
| rs11963931 | 0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2275925 | 0.81[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2275926 | 1.00[ASN][1000 genomes] |
| rs56160793 | 1.00[ASN][1000 genomes] |
| rs56820519 | 1.00[ASN][1000 genomes] |
| rs60465142 | 1.00[ASN][1000 genomes] |
| rs6914092 | 1.00[ASN][1000 genomes] |
| rs73019757 | 1.00[ASN][1000 genomes] |
| rs73019758 | 1.00[ASN][1000 genomes] |
| rs73019760 | 1.00[ASN][1000 genomes] |
| rs73019762 | 1.00[ASN][1000 genomes] |
| rs73019772 | 1.00[ASN][1000 genomes] |
| rs73019780 | 1.00[ASN][1000 genomes] |
| rs73019797 | 1.00[ASN][1000 genomes] |
| rs73021743 | 1.00[ASN][1000 genomes] |
| rs7750449 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830853 | chr6:161180005-161376481 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | esv2422347 | chr6:161211171-161442377 | Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:161321200-161336600 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 2 | chr6:161324800-161330000 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
