Variant report

Variant	rs11752957
Chromosome Location	chr6:161363705-161363706
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:161355190..161357461-chr6:161362771..161365212,2	K562	blood:
2	chr6:161347613..161349495-chr6:161362654..161364258,2	K562	blood:
3	chr6:161355306..161358142-chr6:161361985..161363956,2	MCF-7	breast:
4	chr6:161362872..161367165-chr6:161367890..161370793,5	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs11751714	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751813	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753115	1.00[ASN][1000 genomes]
rs11754459	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755099	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11758427	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11758620	1.00[ASN][1000 genomes]
rs11759366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11963931	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13194157	1.00[JPT][hapmap]
rs1464779	1.00[JPT][hapmap]
rs1464780	1.00[JPT][hapmap]
rs1543261	1.00[JPT][hapmap]
rs1562026	1.00[JPT][hapmap]
rs1982291	1.00[JPT][hapmap]
rs2096408	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2275925	1.00[JPT][hapmap]
rs2275926	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2872613	1.00[JPT][hapmap]
rs4472323	1.00[JPT][hapmap]
rs4708898	1.00[JPT][hapmap]
rs4709486	1.00[JPT][hapmap]
rs4709490	1.00[JPT][hapmap]
rs4709491	1.00[JPT][hapmap]
rs4709495	1.00[JPT][hapmap]
rs4709496	1.00[JPT][hapmap]
rs56160793	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56820519	1.00[ASN][1000 genomes]
rs60465142	1.00[ASN][1000 genomes]
rs615269	1.00[JPT][hapmap]
rs619393	1.00[JPT][hapmap]
rs6455701	1.00[JPT][hapmap]
rs6900500	1.00[JPT][hapmap]
rs6905942	1.00[JPT][hapmap]
rs6913706	1.00[JPT][hapmap]
rs6914092	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923835	1.00[JPT][hapmap]
rs6925502	1.00[JPT][hapmap]
rs6925800	1.00[JPT][hapmap]
rs6929462	1.00[JPT][hapmap]
rs6933810	1.00[JPT][hapmap]
rs705829	1.00[JPT][hapmap]
rs73017797	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73019757	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73019758	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73019760	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73019762	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73019772	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73019780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73019797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73021743	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738762	1.00[JPT][hapmap]
rs7750449	1.00[ASN][1000 genomes]
rs7753585	1.00[JPT][hapmap]
rs7760056	1.00[JPT][hapmap]
rs9355330	1.00[JPT][hapmap]
rs9355332	1.00[JPT][hapmap]
rs9355867	1.00[JPT][hapmap]
rs9355873	1.00[JPT][hapmap]
rs9364585	1.00[JPT][hapmap]
rs9364586	1.00[JPT][hapmap]
rs9365248	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830853	chr6:161180005-161376481	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2422347	chr6:161211171-161442377	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161359800-161365400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:161361600-161372200	Weak transcription	Esophagus	oesophagus

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