Variant report

Variant	rs6933810
Chromosome Location	chr6:161496785-161496786
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:161495917..161498579-chr6:161589322..161591703,2	K562	blood:
2	chr6:161496125..161498637-chr6:161646119..161648729,2	K562	blood:
3	chr6:161496204..161498134-chr6:161499859..161501586,2	K562	blood:
4	chr6:161491365..161493200-chr6:161495759..161498735,2	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1001809	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754459	1.00[JPT][hapmap]
rs11963931	1.00[JPT][hapmap]
rs12195072	1.00[LWK][hapmap]
rs13194157	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1464779	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1464780	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1543261	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1562026	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1982291	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2275925	1.00[JPT][hapmap]
rs2275926	1.00[JPT][hapmap]
rs2872613	0.89[CEU][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];0.85[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4472323	0.90[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4559074	1.00[ASN][1000 genomes]
rs4708898	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4709486	0.90[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4709489	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4709490	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4709491	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4709492	0.88[EUR][1000 genomes]
rs4709493	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4709495	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.85[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4709496	0.91[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs587501	1.00[ASN][1000 genomes]
rs615269	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs619393	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs628430	1.00[ASN][1000 genomes]
rs628923	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6455701	0.90[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6455703	0.84[EUR][1000 genomes]
rs645718	1.00[ASN][1000 genomes]
rs657551	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs668638	1.00[ASN][1000 genomes]
rs682110	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs683549	1.00[ASN][1000 genomes]
rs6900500	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs6902332	1.00[ASN][1000 genomes]
rs6902760	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6905942	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908283	0.82[EUR][1000 genomes]
rs6913706	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6914092	1.00[JPT][hapmap]
rs6918476	1.00[ASN][1000 genomes]
rs6919831	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923835	0.90[CEU][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap]
rs6925502	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925800	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6929462	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs705829	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs705830	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738762	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7753585	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7760056	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9346846	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs9355330	0.89[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9355332	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9355867	0.83[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9355872	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9355873	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9364585	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9364586	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9365248	0.90[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs9458126	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1023982	chr6:161382188-161549831	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1030852	chr6:161477750-161589394	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6933810	MAS1	cis	cerebellum	SCAN
rs6933810	LOC729603	cis	cerebellum	SCAN
rs6933810	OSTCL	cis	parietal	SCAN

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161453600-161506600	Weak transcription	Small Intestine	intestine
2	chr6:161456400-161501600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:161459400-161508800	Weak transcription	Hela-S3	cervix
4	chr6:161459800-161502800	Weak transcription	HUVEC	blood vessel
5	chr6:161460000-161499200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr6:161462800-161497200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr6:161462800-161497800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:161462800-161508200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:161463800-161499200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:161470600-161508000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:161471000-161503800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:161471400-161500600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:161478400-161501400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr6:161479400-161497000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:161480200-161500800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr6:161482800-161498200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:161482800-161499200	Weak transcription	Primary hematopoietic stem cells	blood
18	chr6:161486200-161499200	Weak transcription	Gastric	stomach
19	chr6:161486200-161499200	Weak transcription	Spleen	Spleen
20	chr6:161486200-161519200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr6:161486400-161497200	Weak transcription	Aorta	Aorta
22	chr6:161487800-161501000	Weak transcription	NHEK	skin
23	chr6:161488000-161499200	Weak transcription	Colon Smooth Muscle	Colon
24	chr6:161488000-161501800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:161488200-161501600	Weak transcription	NHDF-Ad	bronchial
26	chr6:161489400-161497200	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr6:161489400-161501400	Weak transcription	Brain Anterior Caudate	brain
28	chr6:161489800-161502600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr6:161490000-161508000	Weak transcription	Fetal Heart	heart
30	chr6:161490800-161501800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr6:161490800-161501800	Weak transcription	Right Ventricle	heart
32	chr6:161490800-161508000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr6:161491000-161538400	Strong transcription	Primary B cells from peripheral blood	blood
34	chr6:161491200-161508400	Weak transcription	Stomach Mucosa	stomach
35	chr6:161491600-161497200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr6:161491600-161498000	Strong transcription	Liver	Liver
37	chr6:161491600-161500000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr6:161491600-161516400	Strong transcription	Placenta	Placenta
39	chr6:161491600-161525400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr6:161491600-161528800	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr6:161491600-161529000	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr6:161491600-161539800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr6:161491800-161498000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr6:161491800-161498200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr6:161492200-161513800	Strong transcription	Fetal Intestine Large	intestine
46	chr6:161492800-161497000	Weak transcription	Thymus	Thymus
47	chr6:161493000-161500600	Weak transcription	Colonic Mucosa	Colon
48	chr6:161493400-161497000	Strong transcription	K562	blood
49	chr6:161493600-161502600	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr6:161493800-161503800	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links