Variant report

Variant	rs4559074
Chromosome Location	chr6:161469774-161469775
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:161426027..161428783-chr6:161467805..161470690,2	K562	blood:
2	chr6:161462648..161465458-chr6:161468679..161470862,2	K562	blood:
3	chr6:161466990..161469304-chr6:161469601..161471950,4	K562	blood:
4	chr6:161462428..161466451-chr6:161468081..161472167,5	K562	blood:
5	chr6:161467892..161471897-chr6:161472211..161475123,4	K562	blood:
6	chr6:161468713..161471223-chr6:161633805..161635902,2	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1001809	1.00[ASN][1000 genomes]
rs11754459	1.00[JPT][hapmap]
rs11963931	1.00[JPT][hapmap]
rs13194157	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1464779	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1464780	1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1543261	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1562026	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1982291	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2140652	1.00[GIH][hapmap];0.83[AMR][1000 genomes]
rs2275925	1.00[JPT][hapmap]
rs2275926	1.00[JPT][hapmap]
rs2872613	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4472323	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4708898	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4709486	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4709489	1.00[ASN][1000 genomes]
rs4709490	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4709491	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4709493	1.00[ASN][1000 genomes]
rs4709495	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4709496	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs587501	1.00[ASN][1000 genomes]
rs615269	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs619393	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs628430	1.00[ASN][1000 genomes]
rs628923	1.00[ASN][1000 genomes]
rs632621	1.00[AMR][1000 genomes]
rs6455701	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs645718	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs657551	1.00[ASN][1000 genomes]
rs668638	1.00[ASN][1000 genomes]
rs682110	1.00[ASN][1000 genomes]
rs683549	1.00[ASN][1000 genomes]
rs6900500	1.00[JPT][hapmap]
rs6902332	1.00[ASN][1000 genomes]
rs6902760	1.00[ASN][1000 genomes]
rs6905942	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6913706	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6914092	1.00[JPT][hapmap]
rs6918476	1.00[ASN][1000 genomes]
rs6919831	1.00[ASN][1000 genomes]
rs6923835	1.00[JPT][hapmap]
rs6925502	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6925800	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6929462	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6933810	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6937526	0.91[AMR][1000 genomes]
rs705829	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs705830	1.00[ASN][1000 genomes]
rs7738762	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753585	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760056	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9355330	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9355332	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9355867	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9355872	1.00[ASN][1000 genomes]
rs9355873	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9364585	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9364586	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9365248	1.00[JPT][hapmap]
rs9458126	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1023982	chr6:161382188-161549831	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161416600-161475200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:161435000-161490400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:161443800-161478600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:161448800-161472400	Weak transcription	A549	lung
5	chr6:161449000-161494400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr6:161452800-161489400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:161453600-161470400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:161453600-161506600	Weak transcription	Small Intestine	intestine
9	chr6:161455200-161495800	Weak transcription	Fetal Brain Male	brain
10	chr6:161456400-161501600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr6:161456600-161469800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr6:161456800-161477000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr6:161456800-161485800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:161458200-161471800	Weak transcription	Colonic Mucosa	Colon
15	chr6:161459400-161472000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:161459400-161488800	Weak transcription	Brain Angular Gyrus	brain
17	chr6:161459400-161508800	Weak transcription	Hela-S3	cervix
18	chr6:161459800-161470400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr6:161459800-161496600	Weak transcription	Fetal Kidney	kidney
20	chr6:161459800-161502800	Weak transcription	HUVEC	blood vessel
21	chr6:161460000-161469800	Weak transcription	Fetal Lung	lung
22	chr6:161460000-161499200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr6:161460200-161470000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr6:161460200-161470200	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr6:161460200-161471400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr6:161460200-161473000	Weak transcription	Right Ventricle	heart
27	chr6:161460400-161487200	Weak transcription	Colon Smooth Muscle	Colon
28	chr6:161460400-161488800	Weak transcription	Fetal Heart	heart
29	chr6:161460600-161495600	Weak transcription	HSMMtube	muscle
30	chr6:161461800-161470200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr6:161462000-161469800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr6:161462000-161478400	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr6:161462600-161469800	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr6:161462600-161469800	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr6:161462600-161470000	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr6:161462600-161470800	Weak transcription	Brain Hippocampus Middle	brain
37	chr6:161462600-161472200	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr6:161462600-161472400	Weak transcription	Spleen	Spleen
39	chr6:161462800-161469800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr6:161462800-161469800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr6:161462800-161469800	Weak transcription	Gastric	stomach
42	chr6:161462800-161469800	Weak transcription	Thymus	Thymus
43	chr6:161462800-161470800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr6:161462800-161473000	Weak transcription	Brain Germinal Matrix	brain
45	chr6:161462800-161474200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr6:161462800-161477400	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr6:161462800-161478400	Weak transcription	Esophagus	oesophagus
48	chr6:161462800-161485800	Weak transcription	Aorta	Aorta
49	chr6:161462800-161497200	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr6:161462800-161497800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links