Variant report

Variant	rs9458126
Chromosome Location	chr6:161542198-161542199
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1001809	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13194157	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1464779	1.00[ASN][1000 genomes]
rs1464780	1.00[ASN][1000 genomes]
rs1543261	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1562026	1.00[ASN][1000 genomes]
rs16892149	0.82[AFR][1000 genomes]
rs1982291	1.00[ASN][1000 genomes]
rs2872613	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4472323	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4559074	1.00[ASN][1000 genomes]
rs4708898	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4709486	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4709489	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4709490	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4709491	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4709492	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4709493	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4709495	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4709496	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs587501	1.00[ASN][1000 genomes]
rs615269	1.00[ASN][1000 genomes]
rs619393	1.00[ASN][1000 genomes]
rs628430	1.00[ASN][1000 genomes]
rs628923	1.00[ASN][1000 genomes]
rs6455701	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6455703	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs645718	1.00[ASN][1000 genomes]
rs657551	1.00[ASN][1000 genomes]
rs668638	1.00[ASN][1000 genomes]
rs682110	1.00[ASN][1000 genomes]
rs683549	1.00[ASN][1000 genomes]
rs6902332	1.00[ASN][1000 genomes]
rs6902760	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6905942	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913706	1.00[ASN][1000 genomes]
rs6918476	1.00[ASN][1000 genomes]
rs6919831	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925502	1.00[ASN][1000 genomes]
rs6925800	1.00[ASN][1000 genomes]
rs6929462	1.00[ASN][1000 genomes]
rs6933810	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs705829	1.00[ASN][1000 genomes]
rs705830	1.00[ASN][1000 genomes]
rs7738762	1.00[ASN][1000 genomes]
rs7747038	0.91[AFR][1000 genomes]
rs7753585	1.00[ASN][1000 genomes]
rs7760056	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9346846	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9355330	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9355332	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9355867	1.00[ASN][1000 genomes]
rs9355872	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9355873	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9364585	1.00[ASN][1000 genomes]
rs9364586	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9365248	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9689684	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1023982	chr6:161382188-161549831	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1030852	chr6:161477750-161589394	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161494400-161542400	Strong transcription	Duodenum Mucosa	Duodenum
2	chr6:161514000-161544600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:161517600-161543000	Strong transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:161517800-161542200	Strong transcription	Liver	Liver
5	chr6:161522400-161542400	Strong transcription	Stomach Smooth Muscle	stomach
6	chr6:161526600-161542200	Strong transcription	Adipose Nuclei	Adipose
7	chr6:161527000-161543000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:161527200-161542800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:161527400-161543600	Strong transcription	Fetal Lung	lung
10	chr6:161527600-161547800	Weak transcription	Right Atrium	heart
11	chr6:161528600-161544800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:161529600-161547600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:161533200-161542800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr6:161533200-161543400	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr6:161533600-161543200	Strong transcription	Primary T cells from cord blood	blood
16	chr6:161533800-161542800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:161534000-161549800	Weak transcription	Stomach Mucosa	stomach
18	chr6:161534600-161547200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr6:161534600-161555800	Weak transcription	A549	lung
20	chr6:161534600-161559800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr6:161536000-161543800	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr6:161537000-161546400	Weak transcription	NH-A	brain
23	chr6:161537600-161556800	Weak transcription	Gastric	stomach
24	chr6:161537800-161548200	Weak transcription	Small Intestine	intestine
25	chr6:161538200-161543400	Weak transcription	Brain Cingulate Gyrus	brain
26	chr6:161538200-161544200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr6:161538200-161544200	Weak transcription	Brain Angular Gyrus	brain
28	chr6:161538200-161547800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr6:161538200-161548000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:161538200-161548000	Weak transcription	Aorta	Aorta
31	chr6:161538200-161549400	Weak transcription	NHEK	skin
32	chr6:161538200-161559600	Weak transcription	Rectal Smooth Muscle	rectum
33	chr6:161538400-161543800	Weak transcription	GM12878-XiMat	blood
34	chr6:161538400-161547400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:161538400-161547800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:161538400-161548000	Weak transcription	Lung	lung
37	chr6:161538400-161549400	Weak transcription	HSMMtube	muscle
38	chr6:161538400-161553000	Weak transcription	Spleen	Spleen
39	chr6:161538400-161557800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr6:161538400-161558400	Weak transcription	HMEC	breast
41	chr6:161538600-161543800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr6:161538600-161547400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr6:161538600-161547400	Weak transcription	Fetal Stomach	stomach
44	chr6:161538600-161547400	Weak transcription	Thymus	Thymus
45	chr6:161538600-161547600	Weak transcription	Fetal Thymus	thymus
46	chr6:161538600-161547800	Weak transcription	Esophagus	oesophagus
47	chr6:161538600-161547800	Weak transcription	Right Ventricle	heart
48	chr6:161538600-161552600	Weak transcription	Pancreas	Pancrea
49	chr6:161538600-161554800	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr6:161538600-161555600	Weak transcription	NHLF	lung

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