Variant report

Variant	rs9355867
Chromosome Location	chr6:161458755-161458756
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:161455058..161457220-chr6:161458708..161460603,2	MCF-7	breast:
2	chr6:161412246..161414439-chr6:161458049..161460881,2	K562	blood:
3	chr6:161457964..161460200-chr6:161515366..161517538,2	MCF-7	breast:
4	chr6:161457923..161460607-chr6:161464113..161468101,4	K562	blood:
5	chr6:161457923..161459864-chr6:161464113..161466599,2	K562	blood:

Variant related genes	Relation type
ENSG00000272841	Chromatin interaction
ENSG00000085511	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1001809	1.00[ASN][1000 genomes]
rs10499316	1.00[CHD][hapmap]
rs11754459	1.00[JPT][hapmap]
rs11963931	1.00[JPT][hapmap]
rs13194157	0.83[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13194692	1.00[CHD][hapmap]
rs1464779	1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1464780	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1543261	0.83[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1562026	0.89[ASW][hapmap];0.91[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.96[TSI][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16892303	1.00[CHD][hapmap]
rs17626731	1.00[CHD][hapmap]
rs1982291	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2275925	1.00[JPT][hapmap]
rs2275926	1.00[JPT][hapmap]
rs2872613	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4472323	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4559074	1.00[ASN][1000 genomes]
rs4708898	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4709486	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4709489	1.00[ASN][1000 genomes]
rs4709490	0.83[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4709491	0.83[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4709493	1.00[ASN][1000 genomes]
rs4709495	0.83[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4709496	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs587501	1.00[ASN][1000 genomes]
rs615269	0.83[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs619393	0.83[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs628430	1.00[ASN][1000 genomes]
rs628923	1.00[ASN][1000 genomes]
rs6455701	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs645718	1.00[ASN][1000 genomes]
rs657551	1.00[ASN][1000 genomes]
rs668638	1.00[ASN][1000 genomes]
rs682110	1.00[ASN][1000 genomes]
rs683549	1.00[ASN][1000 genomes]
rs6900500	1.00[JPT][hapmap]
rs6902332	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6902760	1.00[ASN][1000 genomes]
rs6905942	0.83[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6913706	0.83[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6914092	1.00[JPT][hapmap]
rs6918476	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919831	1.00[ASN][1000 genomes]
rs6923835	1.00[JPT][hapmap]
rs6925502	0.83[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6925800	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6929462	0.83[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6933810	0.83[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs705829	0.83[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs705830	1.00[ASN][1000 genomes]
rs7738762	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7753585	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7760056	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7761753	1.00[CHD][hapmap]
rs7770491	1.00[CHD][hapmap]
rs7771961	1.00[CHD][hapmap]
rs9355330	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9355332	0.83[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9355872	1.00[ASN][1000 genomes]
rs9355873	0.83[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9364585	0.91[CEU][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9364586	0.83[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9365245	0.82[MEX][hapmap]
rs9365248	1.00[JPT][hapmap]
rs9458126	1.00[ASN][1000 genomes]
rs9458136	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1023982	chr6:161382188-161549831	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161414400-161469600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:161416600-161475200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr6:161433200-161459200	Weak transcription	Fetal Stomach	stomach
4	chr6:161433400-161459000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:161433600-161459600	Weak transcription	Brain Germinal Matrix	brain
6	chr6:161434000-161459000	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:161435000-161458800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr6:161435000-161490400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:161439200-161458800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr6:161440200-161459200	Weak transcription	Placenta	Placenta
11	chr6:161440600-161459600	Weak transcription	Esophagus	oesophagus
12	chr6:161441200-161459800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:161442600-161459200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:161442800-161459600	Weak transcription	Fetal Intestine Small	intestine
15	chr6:161442800-161463400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr6:161443800-161459000	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr6:161443800-161459000	Weak transcription	Right Ventricle	heart
18	chr6:161443800-161462000	Weak transcription	Spleen	Spleen
19	chr6:161443800-161465600	Weak transcription	Right Atrium	heart
20	chr6:161443800-161478600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr6:161446200-161459000	Weak transcription	Fetal Heart	heart
22	chr6:161447800-161458800	Weak transcription	Hela-S3	cervix
23	chr6:161448800-161472400	Weak transcription	A549	lung
24	chr6:161449000-161494400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr6:161449200-161458800	Weak transcription	Psoas Muscle	Psoas
26	chr6:161449200-161459200	Weak transcription	Left Ventricle	heart
27	chr6:161449200-161459600	Weak transcription	Lung	lung
28	chr6:161449200-161459800	Weak transcription	Pancreas	Pancrea
29	chr6:161449200-161461600	Weak transcription	Gastric	stomach
30	chr6:161450400-161459000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr6:161450600-161459000	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr6:161450600-161462000	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr6:161450800-161461600	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr6:161451400-161459200	Weak transcription	Brain Cingulate Gyrus	brain
35	chr6:161451400-161462000	Weak transcription	Aorta	Aorta
36	chr6:161451400-161462000	Weak transcription	Stomach Mucosa	stomach
37	chr6:161451800-161458800	Weak transcription	Rectal Smooth Muscle	rectum
38	chr6:161451800-161459800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr6:161452400-161459200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr6:161452800-161458800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr6:161452800-161489400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr6:161453400-161458800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr6:161453400-161458800	Weak transcription	NHLF	lung
44	chr6:161453400-161459000	Weak transcription	Colon Smooth Muscle	Colon
45	chr6:161453600-161470400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr6:161453600-161506600	Weak transcription	Small Intestine	intestine
47	chr6:161454000-161461800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr6:161454400-161459600	Weak transcription	Brain Anterior Caudate	brain
49	chr6:161454800-161462000	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr6:161454800-161466000	Strong transcription	Dnd41	blood

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