Variant report

Variant	rs6923835
Chromosome Location	chr6:161551516-161551517
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:161411763..161414575-chr6:161551515..161553491,3	K562	blood:
2	chr6:161411333..161414575-chr6:161549147..161553015,4	K562	blood:
3	chr6:161547634..161549721-chr6:161550165..161554843,5	K562	blood:
4	chr6:161551128..161553657-chr6:161566830..161569140,2	K562	blood:

Variant related genes	Relation type
ENSG00000272841	Chromatin interaction
ENSG00000085511	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11965825	1.00[CHD][hapmap]
rs12191615	1.00[CHD][hapmap]
rs12195072	1.00[CHD][hapmap];1.00[LWK][hapmap]
rs12199314	1.00[CHD][hapmap]
rs12203960	1.00[CHD][hapmap]
rs13194157	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs13197494	1.00[CHD][hapmap]
rs1464779	1.00[JPT][hapmap]
rs1464780	1.00[JPT][hapmap]
rs1543261	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs1562026	1.00[JPT][hapmap]
rs1982291	1.00[JPT][hapmap]
rs2872613	1.00[JPT][hapmap];1.00[LWK][hapmap];0.81[MKK][hapmap]
rs4472323	1.00[JPT][hapmap]
rs4708898	1.00[JPT][hapmap]
rs4709486	1.00[JPT][hapmap]
rs4709490	0.90[CEU][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap]
rs4709491	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs4709495	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs4709496	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs615269	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs619393	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs6455701	1.00[JPT][hapmap];1.00[LWK][hapmap]
rs6900500	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.94[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6905942	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs6913706	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs6925502	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs6925800	1.00[JPT][hapmap]
rs6929462	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs6933810	0.90[CEU][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap]
rs705829	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs7738762	1.00[JPT][hapmap]
rs7748827	1.00[CHD][hapmap]
rs7753585	1.00[JPT][hapmap]
rs7760056	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs9355330	1.00[JPT][hapmap]
rs9355332	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs9355867	1.00[JPT][hapmap]
rs9355873	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs9364585	1.00[JPT][hapmap]
rs9364586	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs9365248	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1030852	chr6:161477750-161589394	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs6923835	MAS1	cis	parietal	SCAN
rs6923835	MAS1	cis	cerebellum	SCAN
rs6923835	MAP3K4	cis	parietal	SCAN
rs6923835	OSTCL	cis	parietal	SCAN

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161534600-161555800	Weak transcription	A549	lung
2	chr6:161534600-161559800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:161537600-161556800	Weak transcription	Gastric	stomach
4	chr6:161538200-161559600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr6:161538400-161553000	Weak transcription	Spleen	Spleen
6	chr6:161538400-161557800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr6:161538400-161558400	Weak transcription	HMEC	breast
8	chr6:161538600-161552600	Weak transcription	Pancreas	Pancrea
9	chr6:161538600-161554800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:161538600-161555600	Weak transcription	NHLF	lung
11	chr6:161538600-161559600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr6:161538800-161553000	Weak transcription	Colonic Mucosa	Colon
13	chr6:161538800-161554400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:161539800-161556800	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr6:161539800-161557200	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr6:161540600-161552800	Weak transcription	HUVEC	blood vessel
17	chr6:161541000-161584600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr6:161541400-161562200	Weak transcription	NHDF-Ad	bronchial
19	chr6:161542000-161567200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr6:161542000-161585600	Weak transcription	Fetal Kidney	kidney
21	chr6:161543800-161552200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
22	chr6:161543800-161554400	Weak transcription	Fetal Heart	heart
23	chr6:161544600-161555800	Weak transcription	Brain Angular Gyrus	brain
24	chr6:161544600-161589600	Weak transcription	Fetal Brain Male	brain
25	chr6:161544800-161553400	Weak transcription	Liver	Liver
26	chr6:161545000-161555400	Weak transcription	Psoas Muscle	Psoas
27	chr6:161545000-161555600	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr6:161545000-161584800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr6:161545800-161551600	Weak transcription	HepG2	liver
30	chr6:161546200-161560800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr6:161546600-161555200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:161547400-161551600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
33	chr6:161547400-161551800	Strong transcription	Left Ventricle	heart
34	chr6:161547400-161552000	Strong transcription	Thymus	Thymus
35	chr6:161547400-161554000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr6:161547600-161555600	Weak transcription	Brain Cingulate Gyrus	brain
37	chr6:161548000-161556200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr6:161548000-161557400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr6:161548200-161556800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr6:161548200-161562000	Strong transcription	Fetal Intestine Small	intestine
41	chr6:161548200-161562800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr6:161548400-161552800	Weak transcription	Ovary	ovary
43	chr6:161548400-161554600	Weak transcription	Right Atrium	heart
44	chr6:161548400-161556400	Weak transcription	Primary B cells from peripheral blood	blood
45	chr6:161548400-161556800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr6:161548400-161561200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr6:161548400-161590800	Weak transcription	Fetal Thymus	thymus
48	chr6:161548600-161557400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr6:161548800-161551800	Strong transcription	Fetal Intestine Large	intestine
50	chr6:161548800-161554600	Strong transcription	Fetal Muscle Leg	muscle

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