Variant report

Variant	rs11758636
Chromosome Location	chr6:27229561-27229562
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11754427	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11757863	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16896736	0.84[AMR][1000 genomes]
rs2273565	0.82[CEU][hapmap];0.83[GIH][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes]
rs3734577	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41269253	0.84[AMR][1000 genomes]
rs5030963	0.84[AMR][1000 genomes]
rs5030964	0.84[AMR][1000 genomes]
rs56405355	0.84[AMR][1000 genomes]
rs73738224	0.84[AMR][1000 genomes]
rs73738225	0.84[AMR][1000 genomes]
rs911186	1.00[CHB][hapmap]
rs9295731	0.84[AMR][1000 genomes]
rs9461344	1.00[CEU][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes]
rs9468007	1.00[GIH][hapmap];0.82[MEX][hapmap]
rs9468018	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases
2	nsv1017328	chr6:27177147-27369588	Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv883505	chr6:27210614-27300580	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv526241	chr6:27229265-27230815	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27220600-27231600	Weak transcription	K562	blood
2	chr6:27227600-27229600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr6:27228000-27229600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:27228000-27229600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:27228000-27229600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:27228000-27229800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
7	chr6:27228000-27229800	Active TSS	H9 Cell Line	embryonic stem cell
8	chr6:27228000-27229800	Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr6:27228000-27229800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
10	chr6:27228200-27229600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
11	chr6:27228600-27229800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
12	chr6:27228800-27229600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:27229200-27229600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:27229200-27229600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
15	chr6:27229200-27230400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:27229400-27229600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:27229400-27229800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
18	chr6:27229400-27229800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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