Variant report

Variant	rs41269253
Chromosome Location	chr6:27215486-27215487
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:34)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:34 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:27215258-27215605	K562	blood:	n/a	n/a
2	CEBPD	chr6:27215155-27215715	K562	blood:	n/a	n/a
3	NR2F2	chr6:27215190-27215611	K562	blood:	n/a	n/a
4	NR2F2	chr6:27215105-27215734	K562	blood:	n/a	n/a
5	POLR2A	chr6:27215254-27215627	K562	blood:	n/a	n/a
6	ZMIZ1	chr6:27215291-27215625	K562	blood:	n/a	n/a
7	PML	chr6:27215143-27215637	K562	blood:	n/a	n/a
8	MAX	chr6:27215292-27215524	K562	blood:	n/a	n/a
9	YY1	chr6:27215398-27215644	K562	blood:	n/a	n/a
10	CEBPD	chr6:27215191-27215697	K562	blood:	n/a	n/a
11	YY1	chr6:27215173-27215636	K562	blood:	n/a	n/a
12	TAL1	chr6:27215261-27215637	K562	blood:	n/a	n/a
13	POLR2A	chr6:27215233-27215625	K562	blood:	n/a	n/a
14	POLR2A	chr6:27215357-27215509	K562	blood:	n/a	n/a
15	TEAD4	chr6:27214971-27215625	K562	blood:	n/a	n/a
16	PML	chr6:27215210-27215663	K562	blood:	n/a	n/a
17	POLR2A	chr6:27211650-27216394	K562	blood:	n/a	n/a
18	REST	chr6:27215224-27215533	K562	blood:	n/a	chr6:27215459-27215469
19	CCNT2	chr6:27215267-27215574	K562	blood:	n/a	n/a
20	GATA2	chr6:27215231-27215681	K562	blood:	n/a	n/a
21	EP300	chr6:27215286-27215601	K562	blood:	n/a	n/a
22	TBL1XR1	chr6:27215311-27215543	K562	blood:	n/a	n/a
23	POLR2A	chr6:27215211-27215601	K562	blood:	n/a	n/a
24	MYC	chr6:27215371-27215517	K562	blood:	n/a	n/a
25	TEAD4	chr6:27215248-27215592	K562	blood:	n/a	n/a
26	JUND	chr6:27215327-27215540	K562	blood:	n/a	n/a
27	RCOR1	chr6:27215300-27215653	K562	blood:	n/a	n/a
28	CBX3	chr6:27215140-27215671	K562	blood:	n/a	n/a
29	RCOR1	chr6:27215216-27215638	K562	blood:	n/a	n/a
30	GABPA	chr6:27215305-27215557	K562	blood:	n/a	n/a
31	UBTF	chr6:27215225-27215598	K562	blood:	n/a	n/a
32	TRIM28	chr6:27215126-27215680	K562	blood:	n/a	n/a
33	MAX	chr6:27215232-27215609	K562	blood:	n/a	n/a
34	MAZ	chr6:27215233-27215612	K562	blood:	n/a	n/a

No data

Variant related genes	Relation type
PRSS16	TF binding region

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11758636	0.84[AMR][1000 genomes]
rs16896736	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17737641	1.00[ASN][1000 genomes]
rs2273565	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs5030963	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5030964	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5030965	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55658856	1.00[ASN][1000 genomes]
rs56138318	1.00[ASN][1000 genomes]
rs56405355	0.83[ASN][1000 genomes]
rs73738224	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73738225	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73738704	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73740444	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9295731	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461344	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468007	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9468018	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases
2	nsv1017328	chr6:27177147-27369588	Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv883505	chr6:27210614-27300580	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27214400-27216200	Enhancers	K562	blood
2	chr6:27215200-27215600	Enhancers	H1 Cell Line	embryonic stem cell
3	chr6:27215400-27215600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links