Variant report

Variant	rs17737641
Chromosome Location	chr6:27174557-27174558
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:27171643..27174637-chr6:27189780..27192131,2	K562	blood:
2	chr6:27172666..27175265-chr6:27265465..27267285,2	K562	blood:
3	chr6:27113325..27119101-chr6:27172973..27177922,8	K562	blood:
4	chr6:27170157..27172532-chr6:27173101..27175252,2	MCF-7	breast:
5	chr6:27173443..27175541-chr6:27778725..27781351,2	K562	blood:
6	chr6:27124389..27126074-chr6:27173688..27175728,2	K562	blood:
7	chr6:27173503..27175010-chr6:27857886..27860275,2	K562	blood:
8	chr6:27162610..27164330-chr6:27172522..27175063,2	K562	blood:
9	chr6:27164413..27166775-chr6:27172734..27175506,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000197903	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000184825	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16896736	1.00[ASN][1000 genomes]
rs2273565	0.83[ASN][1000 genomes]
rs41269253	1.00[ASN][1000 genomes]
rs5030963	1.00[ASN][1000 genomes]
rs5030964	1.00[ASN][1000 genomes]
rs5030965	1.00[ASN][1000 genomes]
rs55658856	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56138318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56405355	0.83[ASN][1000 genomes]
rs73738224	1.00[ASN][1000 genomes]
rs73738225	1.00[ASN][1000 genomes]
rs73738704	1.00[ASN][1000 genomes]
rs73740444	1.00[ASN][1000 genomes]
rs9295731	1.00[ASN][1000 genomes]
rs9461344	1.00[ASN][1000 genomes]
rs9468007	1.00[ASN][1000 genomes]
rs9468018	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27173200-27174600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:27174000-27174600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
3	chr6:27174000-27174600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
4	chr6:27174000-27174600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:27174000-27175800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:27174000-27179600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:27174200-27174600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
8	chr6:27174200-27174600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:27174200-27174600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
10	chr6:27174200-27174600	Flanking Active TSS	K562	blood
11	chr6:27174200-27176200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr6:27174400-27174600	Enhancers	H9 Cell Line	embryonic stem cell
13	chr6:27174400-27174600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:27174400-27174600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr6:27174400-27174600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
16	chr6:27174400-27174600	Bivalent Enhancer	Primary hematopoietic stem cells	blood
17	chr6:27174400-27174800	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr6:27174400-27175000	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr6:27174400-27176000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr6:27174400-27179000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr6:27174400-27181400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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