Variant report
| Variant | rs56138318 |
|---|---|
| Chromosome Location | chr6:27231666-27231667 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:27217610..27222450-chr6:27225253..27232198,9 | MCF-7 | breast: | |
| 2 | chr6:27198224..27199922-chr6:27229756..27232749,2 | K562 | blood: | |
| 3 | chr6:27226861..27228443-chr6:27230565..27232578,2 | MCF-7 | breast: | |
| 4 | chr6:27226313..27228552-chr6:27231256..27233186,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000112812 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs16896736 | 1.00[ASN][1000 genomes] |
| rs17737641 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2273565 | 0.83[ASN][1000 genomes] |
| rs41269253 | 1.00[ASN][1000 genomes] |
| rs5030963 | 1.00[ASN][1000 genomes] |
| rs5030964 | 1.00[ASN][1000 genomes] |
| rs5030965 | 1.00[ASN][1000 genomes] |
| rs55658856 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56405355 | 0.83[ASN][1000 genomes] |
| rs73738224 | 1.00[ASN][1000 genomes] |
| rs73738225 | 1.00[ASN][1000 genomes] |
| rs73738704 | 1.00[ASN][1000 genomes] |
| rs73740444 | 1.00[ASN][1000 genomes] |
| rs9295731 | 1.00[ASN][1000 genomes] |
| rs9461344 | 1.00[ASN][1000 genomes] |
| rs9468007 | 1.00[ASN][1000 genomes] |
| rs9468018 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948921 | chr6:26556890-27443957 | Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 472 gene(s) | inside rSNPs | diseases |
| 2 | nsv1017328 | chr6:27177147-27369588 | Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 29 gene(s) | inside rSNPs | diseases |
| 3 | nsv883505 | chr6:27210614-27300580 | Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:27231600-27232000 | Enhancers | K562 | blood |
