Variant report

Variant	rs11759147
Chromosome Location	chr6:24288012-24288013
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs62400418	0.82[EUR][1000 genomes]
rs66531067	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24284000-24288400	Weak transcription	Spleen	Spleen
2	chr6:24284200-24292000	Weak transcription	Fetal Intestine Large	intestine
3	chr6:24284200-24294200	Weak transcription	Fetal Intestine Small	intestine
4	chr6:24284600-24292000	Weak transcription	A549	lung
5	chr6:24284600-24302800	Weak transcription	Pancreas	Pancrea
6	chr6:24286800-24288200	Genic enhancers	HepG2	liver
7	chr6:24287800-24288600	Genic enhancers	Fetal Kidney	kidney
8	chr6:24288000-24292800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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