Variant report

Variant	rs62400418
Chromosome Location	chr6:24300602-24300603
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11759147	0.82[EUR][1000 genomes]
rs12191697	1.00[ASN][1000 genomes]
rs13215665	1.00[ASN][1000 genomes]
rs3761788	1.00[ASN][1000 genomes]
rs62400389	1.00[AFR][1000 genomes]
rs62400391	1.00[AFR][1000 genomes]
rs62400407	1.00[AFR][1000 genomes]
rs62400447	1.00[AFR][1000 genomes]
rs62400450	1.00[AFR][1000 genomes]
rs72828977	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24284600-24302800	Weak transcription	Pancreas	Pancrea
2	chr6:24292200-24302000	Weak transcription	A549	lung
3	chr6:24294600-24312000	Weak transcription	Fetal Intestine Small	intestine
4	chr6:24297600-24302600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:24297800-24302000	Weak transcription	Fetal Intestine Large	intestine
6	chr6:24297800-24308000	Weak transcription	Fetal Kidney	kidney
7	chr6:24298000-24303800	Strong transcription	HepG2	liver
8	chr6:24298000-24308200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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