Variant report

Variant	rs62400389
Chromosome Location	chr6:24241985-24241986
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs62400284	1.00[AFR][1000 genomes]
rs62400390	0.82[EUR][1000 genomes]
rs62400391	1.00[AFR][1000 genomes]
rs62400395	0.82[EUR][1000 genomes]
rs62400396	0.82[EUR][1000 genomes]
rs62400398	0.82[EUR][1000 genomes]
rs62400399	0.82[EUR][1000 genomes]
rs62400401	0.82[EUR][1000 genomes]
rs62400402	0.82[EUR][1000 genomes]
rs62400407	1.00[AFR][1000 genomes]
rs62400418	1.00[AFR][1000 genomes]
rs62400447	1.00[AFR][1000 genomes]
rs62400450	1.00[AFR][1000 genomes]
rs62403461	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24228800-24245600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:24229400-24243400	Weak transcription	Fetal Kidney	kidney
3	chr6:24230200-24242400	Weak transcription	Pancreas	Pancrea
4	chr6:24232000-24263000	Weak transcription	Fetal Intestine Small	intestine
5	chr6:24240800-24242400	Enhancers	HepG2	liver
6	chr6:24241200-24250200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:24241600-24245000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links