Variant report

Variant	rs62400402
Chromosome Location	chr6:24272505-24272506
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11962500	0.87[EUR][1000 genomes]
rs12110711	0.83[EUR][1000 genomes]
rs57440601	0.83[EUR][1000 genomes]
rs59713487	0.83[EUR][1000 genomes]
rs60955845	0.87[EUR][1000 genomes]
rs62400389	0.82[EUR][1000 genomes]
rs62400390	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62400392	0.87[EUR][1000 genomes]
rs62400393	0.87[EUR][1000 genomes]
rs62400394	0.81[AMR][1000 genomes]
rs62400395	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62400396	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62400397	0.87[EUR][1000 genomes]
rs62400398	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62400399	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62400401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62403461	0.93[EUR][1000 genomes]
rs62403465	0.83[EUR][1000 genomes]
rs73394068	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24263000-24283000	Weak transcription	Fetal Intestine Large	intestine
2	chr6:24263400-24273800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:24270200-24274800	Strong transcription	HepG2	liver
4	chr6:24270400-24283800	Weak transcription	Pancreas	Pancrea
5	chr6:24271000-24273200	Weak transcription	Fetal Kidney	kidney
6	chr6:24271200-24283400	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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