Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:23176286..23178062-chr6:24249606..24251613,2	K562	blood:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11757997	0.98[AFR][1000 genomes]
rs11962116	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11962468	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11962500	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11966291	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12110711	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57440601	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59336318	0.93[EUR][1000 genomes]
rs59713487	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60955845	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61232212	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62400390	0.87[EUR][1000 genomes]
rs62400392	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62400395	0.87[EUR][1000 genomes]
rs62400396	0.87[EUR][1000 genomes]
rs62400397	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62400398	0.87[EUR][1000 genomes]
rs62400399	0.87[EUR][1000 genomes]
rs62400401	0.87[EUR][1000 genomes]
rs62400402	0.87[EUR][1000 genomes]
rs62403461	0.81[EUR][1000 genomes]
rs62403465	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62403469	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62403472	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73394068	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24232000-24263000	Weak transcription	Fetal Intestine Small	intestine
2	chr6:24243800-24270000	Weak transcription	Fetal Kidney	kidney
3	chr6:24245800-24251000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:24245800-24251600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:24249800-24250800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:24249800-24252600	Strong transcription	HepG2	liver
7	chr6:24249800-24253000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr6:24249800-24253200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:24250000-24251400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr6:24250000-24253200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:24250200-24253200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr6:24250400-24250600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:24250400-24250600	Enhancers	H9 Cell Line	embryonic stem cell
14	chr6:24250400-24250600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:24250400-24250600	Enhancers	Pancreas	Pancrea
16	chr6:24250400-24250800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr6:24250400-24252600	Enhancers	H1 Cell Line	embryonic stem cell
18	chr6:24250400-24253200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:24250400-24253800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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