Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11962116	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11962468	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11966291	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12110711	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57440601	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59336318	0.93[EUR][1000 genomes]
rs59713487	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60955845	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61232212	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62400390	0.87[EUR][1000 genomes]
rs62400392	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62400393	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62400395	0.87[EUR][1000 genomes]
rs62400396	0.87[EUR][1000 genomes]
rs62400397	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62400398	0.87[EUR][1000 genomes]
rs62400399	0.87[EUR][1000 genomes]
rs62400400	0.93[AFR][1000 genomes]
rs62400401	0.87[EUR][1000 genomes]
rs62400402	0.87[EUR][1000 genomes]
rs62403461	0.81[EUR][1000 genomes]
rs62403465	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62403469	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62403472	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73394068	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24263000-24283000	Weak transcription	Fetal Intestine Large	intestine
2	chr6:24263400-24273800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:24270000-24271000	Enhancers	Fetal Kidney	kidney
4	chr6:24270000-24271200	Enhancers	Fetal Intestine Small	intestine
5	chr6:24270200-24271800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:24270200-24274800	Strong transcription	HepG2	liver
7	chr6:24270400-24283800	Weak transcription	Pancreas	Pancrea

Quick Search: