Variant report

Variant	rs62400400
Chromosome Location	chr6:24266331-24266332
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11962500	0.93[AFR][1000 genomes]
rs60955845	0.99[AFR][1000 genomes]
rs62400397	0.87[AFR][1000 genomes]
rs72828998	0.85[ASN][1000 genomes]
rs72830826	0.85[ASN][1000 genomes]
rs73394068	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24243800-24270000	Weak transcription	Fetal Kidney	kidney
2	chr6:24263000-24283000	Weak transcription	Fetal Intestine Large	intestine
3	chr6:24263400-24269400	Weak transcription	Fetal Intestine Small	intestine
4	chr6:24263400-24270200	Weak transcription	Pancreas	Pancrea
5	chr6:24263400-24273800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:24265200-24267800	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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