Variant report

Variant	rs11759192
Chromosome Location	chr6:36086976-36086977
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35993784..35998553-chr6:36086872..36091412,11	MCF-7	breast:
2	chr6:36086449..36088959-chr6:36383375..36385135,2	K562	blood:
3	chr6:36083240..36096353-chr6:36161490..36168411,30	MCF-7	breast:
4	chr6:36083349..36090492-chr6:36162486..36165995,10	K562	blood:
5	chr6:36065903..36068557-chr6:36084761..36087937,3	K562	blood:
6	chr6:36085224..36088803-chr6:36161164..36165491,4	K562	blood:
7	chr6:35887708..35890189-chr6:36084922..36087566,2	MCF-7	breast:
8	chr6:36068703..36074391-chr6:36083766..36088093,5	K562	blood:
9	chr6:36077332..36078924-chr6:36085122..36087416,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000246982	Chromatin interaction
ENSG00000112062	Chromatin interaction
ENSG00000096063	Chromatin interaction
ENSG00000096070	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11755358	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12111171	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12662129	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12664506	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12665389	1.00[CEU][hapmap];0.85[JPT][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17714205	1.00[CEU][hapmap];0.85[JPT][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3730326	1.00[CEU][hapmap];0.82[JPT][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3804452	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851006	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36022000-36088800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:36051600-36088800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:36068000-36091400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:36076600-36088200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:36076600-36088600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:36077200-36088400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:36077200-36088400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:36077200-36088800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:36077200-36088800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:36077200-36088800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr6:36077200-36094800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:36077200-36096600	Weak transcription	Fetal Brain Female	brain
13	chr6:36077400-36094800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr6:36077400-36096400	Weak transcription	Fetal Brain Male	brain
15	chr6:36077600-36089000	Weak transcription	A549	lung
16	chr6:36078000-36088400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr6:36078400-36088200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr6:36078400-36088400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr6:36078400-36088400	Weak transcription	NHLF	lung
20	chr6:36078400-36092000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:36078600-36088800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr6:36078600-36091400	Weak transcription	Brain Anterior Caudate	brain
23	chr6:36078800-36087800	Weak transcription	HUVEC	blood vessel
24	chr6:36079000-36088600	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr6:36079200-36088000	Weak transcription	Fetal Kidney	kidney
26	chr6:36079200-36088800	Weak transcription	NH-A	brain
27	chr6:36079600-36088400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr6:36079600-36088400	Weak transcription	NHEK	skin
29	chr6:36079600-36088600	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr6:36079600-36088800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr6:36079600-36088800	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr6:36079600-36089000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr6:36079600-36089000	Weak transcription	HMEC	breast
34	chr6:36079600-36091400	Weak transcription	Right Ventricle	heart
35	chr6:36079600-36092600	Weak transcription	Brain Germinal Matrix	brain
36	chr6:36079600-36094400	Weak transcription	Hela-S3	cervix
37	chr6:36079800-36088400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr6:36079800-36088800	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr6:36080000-36088200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr6:36080200-36088400	Weak transcription	Osteobl	bone
41	chr6:36080400-36087800	Enhancers	Primary T helper cells PMA-I stimulated	--
42	chr6:36080400-36088400	Enhancers	Primary T helper cells fromperipheralblood	blood
43	chr6:36080600-36087800	Enhancers	Primary T helper naive cells from peripheral blood	blood
44	chr6:36080600-36088000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
45	chr6:36080600-36088400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr6:36080800-36088200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
47	chr6:36081000-36088400	Weak transcription	HSMM	muscle
48	chr6:36081200-36088200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
49	chr6:36081200-36088200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
50	chr6:36081200-36088400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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