Variant report

Variant	rs12662129
Chromosome Location	chr6:36038876-36038877
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35994168..35996975-chr6:36037996..36039919,3	MCF-7	breast:
2	chr6:36035170..36039819-chr6:36042756..36047669,7	K562	blood:
3	chr6:36037602..36039878-chr6:36044052..36046238,2	MCF-7	breast:
4	chr6:35996305..35998725-chr6:36036875..36039793,2	K562	blood:
5	chr6:36019349..36024573-chr6:36034890..36038920,5	K562	blood:

Variant related genes	Relation type
ENSG00000112062	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10947585	0.81[ASN][1000 genomes]
rs11755358	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11759192	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12111171	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12664488	0.81[ASN][1000 genomes]
rs12664506	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12665389	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17713154	0.81[ASN][1000 genomes]
rs17714205	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3730326	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3804452	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs851006	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36006400-36039800	Weak transcription	Esophagus	oesophagus
2	chr6:36018200-36050000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:36020400-36047400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:36022000-36088800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:36023000-36047400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:36028200-36046000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr6:36028200-36046600	Weak transcription	Fetal Stomach	stomach
8	chr6:36028200-36047200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:36028200-36047800	Weak transcription	Brain Germinal Matrix	brain
10	chr6:36028200-36048400	Weak transcription	Fetal Brain Female	brain
11	chr6:36028400-36047400	Weak transcription	Colonic Mucosa	Colon
12	chr6:36028400-36047800	Weak transcription	Lung	lung
13	chr6:36028600-36043800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr6:36028600-36046600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:36028600-36050200	Weak transcription	Spleen	Spleen
16	chr6:36028800-36043200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr6:36029200-36048000	Weak transcription	NH-A	brain
18	chr6:36029600-36041600	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr6:36029600-36041800	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr6:36029600-36043400	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr6:36029600-36047600	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr6:36029800-36043800	Weak transcription	HMEC	breast
23	chr6:36030200-36042400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr6:36030800-36043200	Weak transcription	Fetal Muscle Leg	muscle
25	chr6:36031000-36042600	Weak transcription	Fetal Muscle Trunk	muscle
26	chr6:36031400-36040600	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr6:36031600-36041200	Weak transcription	Dnd41	blood
28	chr6:36032800-36040600	Weak transcription	HSMM	muscle
29	chr6:36032800-36041200	Weak transcription	Fetal Thymus	thymus
30	chr6:36032800-36043600	Weak transcription	Primary B cells from peripheral blood	blood
31	chr6:36033000-36039000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr6:36033000-36046600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr6:36033200-36043400	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr6:36033200-36046800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr6:36033400-36040800	Weak transcription	Hela-S3	cervix
36	chr6:36033400-36043400	Weak transcription	Placenta	Placenta
37	chr6:36033400-36044200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr6:36033400-36045600	Weak transcription	Left Ventricle	heart
39	chr6:36033400-36045600	Weak transcription	Pancreas	Pancrea
40	chr6:36033400-36045600	Weak transcription	Thymus	Thymus
41	chr6:36033400-36047800	Weak transcription	Gastric	stomach
42	chr6:36033400-36048000	Weak transcription	Fetal Brain Male	brain
43	chr6:36033400-36050200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr6:36033600-36041400	Weak transcription	Primary hematopoietic stem cells	blood
45	chr6:36033600-36041600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr6:36033600-36043200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr6:36033600-36048000	Weak transcription	Ovary	ovary
48	chr6:36033800-36043200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr6:36034400-36040600	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr6:36034400-36040800	Weak transcription	GM12878-XiMat	blood

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