Variant report

Variant	rs10947585
Chromosome Location	chr6:35962622-35962623
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAF7	chr6:35962520-35962731	K562	blood:	n/a	n/a
2	POLR2A	chr6:35962523-35962752	K562	blood:	n/a	n/a
3	POLR2A	chr6:35962422-35962752	K562	blood:	n/a	n/a
4	TBP	chr6:35962528-35962831	K562	blood:	n/a	n/a
5	HEY1	chr6:35962106-35962711	K562	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35941736..35944715-chr6:35961493..35964172,2	K562	blood:
2	chr6:35953758..35956350-chr6:35960269..35962720,2	K562	blood:
3	chr6:35941740..35943901-chr6:35961396..35963029,2	K562	blood:
4	chr6:35874629..35877159-chr6:35962577..35965490,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10947586	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10947588	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11750972	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11965835	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12662129	0.81[ASN][1000 genomes]
rs12664488	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12664506	0.87[ASN][1000 genomes]
rs12665072	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12665389	0.81[ASN][1000 genomes]
rs16868729	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17656461	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17707331	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17713154	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17714205	0.81[ASN][1000 genomes]
rs2097480	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3730326	0.81[ASN][1000 genomes]
rs7753932	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7754219	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv528432	chr6:35958871-36035354	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35955200-35971800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:35956200-35967600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr6:35960400-35965200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr6:35960600-35963600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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