Variant report

Variant	rs17707331
Chromosome Location	chr6:35960390-35960391
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10947585	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10947586	0.92[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10947588	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11750972	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11965835	0.92[CEU][hapmap];0.86[MEX][hapmap];0.95[MKK][hapmap];0.96[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12111171	0.89[CHD][hapmap];0.81[TSI][hapmap]
rs12664488	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12664506	0.85[ASN][1000 genomes]
rs12665072	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16868729	0.92[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17656461	0.92[CEU][hapmap];0.86[MEX][hapmap];0.86[MKK][hapmap];0.96[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17707124	0.82[ASW][hapmap]
rs17713154	0.92[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.86[MKK][hapmap];0.96[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17714205	0.89[CHD][hapmap];0.92[GIH][hapmap];0.81[TSI][hapmap]
rs2097480	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3804452	0.89[CHD][hapmap];0.92[GIH][hapmap];0.81[TSI][hapmap]
rs7753932	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7754219	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs851006	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv528432	chr6:35958871-36035354	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35955200-35971800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:35956200-35967600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr6:35957800-35960600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr6:35959400-35960600	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr6:35959600-35960400	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr6:35960200-35961000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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