Variant report

Variant	rs17707124
Chromosome Location	chr6:35942313-35942314
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12660151	1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap]
rs12662979	1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap]
rs12663364	1.00[JPT][hapmap]
rs12664249	1.00[CEU][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12664440	1.00[JPT][hapmap]
rs12664510	1.00[JPT][hapmap]
rs12665389	1.00[YRI][hapmap]
rs17707331	0.82[ASW][hapmap]
rs17714205	1.00[YRI][hapmap]
rs3730326	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs3804452	1.00[YRI][hapmap]
rs73729635	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73729637	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73729642	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35923200-35959600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr6:35940000-35943800	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr6:35941200-35944600	Weak transcription	Fetal Lung	lung
4	chr6:35941200-35950000	Weak transcription	Fetal Brain Female	brain
5	chr6:35941400-35942400	Enhancers	GM12878-XiMat	blood
6	chr6:35941600-35944800	Weak transcription	Liver	Liver
7	chr6:35941600-35952200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:35941800-35942400	Enhancers	K562	blood
9	chr6:35941800-35942600	Enhancers	Stomach Mucosa	stomach
10	chr6:35941800-35944800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:35941800-35945400	Weak transcription	Fetal Brain Male	brain
12	chr6:35942000-35942400	Enhancers	HepG2	liver
13	chr6:35942200-35945000	Weak transcription	Adipose Nuclei	Adipose
14	chr6:35942200-35949200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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