Variant report

Variant	rs12664440
Chromosome Location	chr6:35849797-35849798
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35848200..35850000-chr6:35882054..35883840,2	K562	blood:
2	chr6:35848876..35852959-chr6:35854286..35857264,7	K562	blood:
3	chr6:35842129..35843934-chr6:35848888..35851192,2	K562	blood:
4	chr6:35848200..35851472-chr6:35882054..35884920,3	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12660151	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12662979	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12663364	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12664510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17707124	1.00[JPT][hapmap]
rs3730326	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35787800-35855600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:35800600-35859000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:35807000-35860400	Weak transcription	Brain Angular Gyrus	brain
4	chr6:35812400-35850200	Weak transcription	Stomach Mucosa	stomach
5	chr6:35817000-35859000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:35824400-35858400	Weak transcription	Colon Smooth Muscle	Colon
7	chr6:35824400-35863800	Weak transcription	Right Ventricle	heart
8	chr6:35825000-35885600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr6:35825200-35874600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:35825400-35856400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr6:35826400-35858800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
12	chr6:35827000-35858800	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr6:35832000-35856800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr6:35835000-35865400	Weak transcription	Spleen	Spleen
15	chr6:35835600-35873800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr6:35837000-35876800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr6:35837400-35863200	Weak transcription	Pancreas	Pancrea
18	chr6:35837400-35887000	Weak transcription	Psoas Muscle	Psoas
19	chr6:35837400-35887400	Weak transcription	Gastric	stomach
20	chr6:35837600-35849800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr6:35837600-35854200	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr6:35837600-35855400	Weak transcription	Brain Substantia Nigra	brain
23	chr6:35837800-35850200	Weak transcription	Colonic Mucosa	Colon
24	chr6:35837800-35850200	Weak transcription	Esophagus	oesophagus
25	chr6:35837800-35851800	Weak transcription	NHEK	skin
26	chr6:35837800-35863400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr6:35837800-35880600	Weak transcription	Aorta	Aorta
28	chr6:35837800-35886800	Weak transcription	Stomach Smooth Muscle	stomach
29	chr6:35838200-35851400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr6:35838200-35871400	Weak transcription	HSMMtube	muscle
31	chr6:35838600-35853000	Weak transcription	Osteobl	bone
32	chr6:35838600-35887400	Weak transcription	Small Intestine	intestine
33	chr6:35838800-35885000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr6:35839400-35873000	Weak transcription	NHLF	lung
35	chr6:35841000-35853200	Weak transcription	NH-A	brain
36	chr6:35841200-35850000	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr6:35842000-35850400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr6:35843600-35850400	Strong transcription	Rectal Mucosa Donor 29	rectum
39	chr6:35843600-35858800	Strong transcription	Primary neutrophils fromperipheralblood	blood
40	chr6:35844200-35853200	Strong transcription	Fetal Thymus	thymus
41	chr6:35845000-35850000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr6:35845000-35852200	Weak transcription	HUVEC	blood vessel
43	chr6:35846200-35852400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr6:35846600-35851200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr6:35846800-35850200	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr6:35847000-35850400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr6:35847000-35850600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr6:35847000-35850800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
49	chr6:35847000-35851000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
50	chr6:35847200-35849800	ZNF genes & repeats	Primary B cells from peripheral blood	blood

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