Variant report

Variant	rs12660151
Chromosome Location	chr6:35800681-35800682
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35799857..35801996-chr6:35804965..35806717,2	K562	blood:
2	chr6:35798317..35801989-chr6:35804923..35807992,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000096063	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12662979	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12663364	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12664440	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12664510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17707124	1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758048	chr6:35463741-35806504	Genic enhancers Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2759420	chr6:35463741-35806504	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
4	nsv821646	chr6:35604428-35802594	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv885803	chr6:35621781-35805133	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv885804	chr6:35621781-35809776	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	nsv428143	chr6:35637083-35806504	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
8	esv1791730	chr6:35754783-35805144	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35777000-35801400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:35787800-35855600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:35791400-35824200	Weak transcription	Fetal Brain Male	brain
4	chr6:35791600-35819800	Weak transcription	NHLF	lung
5	chr6:35793000-35801400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:35793200-35801400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:35793400-35805000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:35797200-35801400	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr6:35797200-35801400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:35797400-35801200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr6:35797400-35801400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr6:35797600-35801400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:35797600-35801400	Weak transcription	Primary T cells from cord blood	blood
14	chr6:35797800-35801400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:35797800-35801400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr6:35798000-35801000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:35798000-35801200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr6:35798000-35803000	Weak transcription	Brain Angular Gyrus	brain
19	chr6:35798200-35801400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr6:35798200-35801400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr6:35798200-35801400	Weak transcription	K562	blood
22	chr6:35798200-35823800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr6:35798400-35800800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:35798400-35801200	Weak transcription	A549	lung
25	chr6:35798600-35801400	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr6:35798800-35801200	Weak transcription	Primary B cells from peripheral blood	blood
27	chr6:35798800-35801200	Weak transcription	HSMM	muscle
28	chr6:35798800-35801400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:35798800-35801400	Weak transcription	Left Ventricle	heart
30	chr6:35799000-35801000	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr6:35799000-35801000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:35799000-35801200	Weak transcription	Primary hematopoietic stem cells	blood
33	chr6:35799000-35802600	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr6:35799200-35800800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr6:35799200-35801000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr6:35799200-35801000	Weak transcription	Fetal Intestine Large	intestine
37	chr6:35799200-35801000	Weak transcription	Fetal Thymus	thymus
38	chr6:35799200-35802800	Weak transcription	Small Intestine	intestine
39	chr6:35799200-35806600	Weak transcription	Fetal Heart	heart
40	chr6:35799400-35801000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr6:35799400-35801000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr6:35799400-35801000	Weak transcription	Duodenum Mucosa	Duodenum
43	chr6:35799400-35801200	Weak transcription	Brain Substantia Nigra	brain
44	chr6:35799400-35801200	Weak transcription	Dnd41	blood
45	chr6:35799400-35801200	Weak transcription	HMEC	breast
46	chr6:35799400-35802000	Weak transcription	Osteobl	bone
47	chr6:35799400-35808600	Weak transcription	Fetal Lung	lung
48	chr6:35799600-35801000	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr6:35799600-35801200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr6:35799600-35801200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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