Variant report

Variant	rs12664510
Chromosome Location	chr6:35837058-35837059
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12660151	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12662979	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12663364	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12664440	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17707124	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35787800-35855600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:35799600-35837200	Weak transcription	Fetal Kidney	kidney
3	chr6:35800600-35859000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:35801000-35840600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:35801200-35837200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:35801200-35849000	Strong transcription	Dnd41	blood
7	chr6:35804400-35849000	Strong transcription	K562	blood
8	chr6:35806800-35844800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:35807000-35860400	Weak transcription	Brain Angular Gyrus	brain
10	chr6:35812400-35850200	Weak transcription	Stomach Mucosa	stomach
11	chr6:35815800-35840600	Strong transcription	Rectal Mucosa Donor 29	rectum
12	chr6:35816800-35844000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr6:35817000-35859000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:35817400-35839200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:35817400-35848200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:35819000-35839800	Weak transcription	Fetal Heart	heart
17	chr6:35821800-35841200	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr6:35822200-35837800	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr6:35824400-35858400	Weak transcription	Colon Smooth Muscle	Colon
20	chr6:35824400-35863800	Weak transcription	Right Ventricle	heart
21	chr6:35824800-35847200	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr6:35825000-35885600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr6:35825200-35848600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr6:35825200-35874600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr6:35825400-35856400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr6:35826200-35840600	Strong transcription	Primary hematopoietic stem cells	blood
27	chr6:35826400-35858800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
28	chr6:35826800-35844400	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr6:35827000-35858800	Strong transcription	HUES6 Cell Line	embryonic stem cell
30	chr6:35829800-35837200	Weak transcription	Brain Anterior Caudate	brain
31	chr6:35831200-35840200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:35831600-35838800	Strong transcription	Primary B cells from cord blood	blood
33	chr6:35831600-35841200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr6:35831800-35844600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr6:35832000-35856800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr6:35832200-35838400	Strong transcription	Primary T cells from cord blood	blood
37	chr6:35832200-35841000	Strong transcription	Rectal Mucosa Donor 31	rectum
38	chr6:35832200-35843800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr6:35832800-35847400	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr6:35833400-35837800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr6:35833400-35838200	Strong transcription	ES-I3 Cell Line	embryonic stem cell
42	chr6:35833600-35848600	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr6:35833800-35838600	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr6:35833800-35840600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr6:35834000-35837600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr6:35834000-35837600	Strong transcription	Ovary	ovary
47	chr6:35834000-35837800	Strong transcription	Fetal Muscle Leg	muscle
48	chr6:35834000-35837800	Strong transcription	GM12878-XiMat	blood
49	chr6:35834000-35838200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr6:35834000-35838600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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