Variant report

Variant	rs73729642
Chromosome Location	chr6:35939732-35939733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12664249	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17707124	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60858339	0.80[AFR][1000 genomes]
rs73729635	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73729636	0.92[ASN][1000 genomes]
rs73729637	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35923200-35959600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr6:35935400-35940000	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr6:35935400-35940000	Weak transcription	Stomach Mucosa	stomach
4	chr6:35935600-35940200	Weak transcription	Liver	Liver
5	chr6:35935600-35941000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr6:35935600-35941400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:35935800-35940400	Weak transcription	Fetal Intestine Small	intestine
8	chr6:35936000-35940400	Weak transcription	Fetal Intestine Large	intestine
9	chr6:35936200-35939800	Weak transcription	HepG2	liver
10	chr6:35937800-35941800	Enhancers	Fetal Brain Male	brain
11	chr6:35938200-35941800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:35938400-35940400	Weak transcription	Fetal Brain Female	brain
13	chr6:35938400-35941200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr6:35938600-35940400	Weak transcription	K562	blood
15	chr6:35938800-35941600	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr6:35939000-35940400	Enhancers	Fetal Muscle Trunk	muscle
17	chr6:35939200-35941600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:35939400-35941800	Enhancers	Fetal Stomach	stomach
19	chr6:35939600-35941800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links