Variant report

Variant	rs10947588
Chromosome Location	chr6:35983874-35983875
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10947585	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10947586	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11750972	0.90[EUR][1000 genomes]
rs11965835	0.90[EUR][1000 genomes]
rs12664488	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12664506	0.85[ASN][1000 genomes]
rs12665072	0.90[EUR][1000 genomes]
rs16868729	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17656461	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17707331	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17713154	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2097480	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7753932	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7754219	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv528432	chr6:35958871-36035354	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35964800-35991800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:35981400-35986400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr6:35982000-35988200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:35982400-35986800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:35983400-35984200	Enhancers	Brain Hippocampus Middle	brain
6	chr6:35983800-35984200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr6:35983800-35987200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links