Variant report

Variant	rs11759258
Chromosome Location	chr6:165326259-165326260
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1121857	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751532	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11756300	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12176440	0.85[ASN][1000 genomes]
rs56152142	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57132561	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6915832	0.86[ASN][1000 genomes]
rs6933954	0.88[ASN][1000 genomes]
rs6934720	0.86[ASN][1000 genomes]
rs73245914	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73245920	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73245926	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73245927	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73245929	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73245940	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73245941	0.86[AFR][1000 genomes]
rs73788409	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs752398	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7769679	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs996300	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs996301	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs996302	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs996827	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv605232	chr6:164994771-165401154	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv521153	chr6:165279393-165343557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv605244	chr6:165293940-165330551	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
4	nsv886925	chr6:165319631-165705488	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165323800-165326400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:165325200-165326400	Enhancers	Fetal Stomach	stomach
3	chr6:165325400-165326400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr6:165325400-165326400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:165325400-165326800	Enhancers	Fetal Muscle Leg	muscle
6	chr6:165325600-165327200	Enhancers	Right Ventricle	heart
7	chr6:165325800-165326400	Enhancers	Brain Anterior Caudate	brain
8	chr6:165325800-165326400	Enhancers	Brain Hippocampus Middle	brain
9	chr6:165325800-165326400	Weak transcription	Left Ventricle	heart
10	chr6:165325800-165326600	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr6:165325800-165326600	Enhancers	Fetal Brain Female	brain
12	chr6:165325800-165326600	Enhancers	Psoas Muscle	Psoas
13	chr6:165325800-165327600	Enhancers	Brain Germinal Matrix	brain
14	chr6:165326000-165326400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr6:165326000-165326400	Enhancers	Brain Angular Gyrus	brain
16	chr6:165326000-165326400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr6:165326000-165326400	Enhancers	Right Atrium	heart
18	chr6:165326000-165326400	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr6:165326000-165327000	Enhancers	Fetal Brain Male	brain
20	chr6:165326200-165326400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:165326200-165326400	Enhancers	Pancreas	Pancrea
22	chr6:165326200-165326600	Enhancers	Skeletal Muscle Female	skeletal muscle

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