Variant report

Variant	rs73245929
Chromosome Location	chr6:165325509-165325510
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1121857	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751532	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11756300	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759258	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12176440	0.85[ASN][1000 genomes]
rs56152142	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57132561	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6915832	0.86[ASN][1000 genomes]
rs6933954	0.88[ASN][1000 genomes]
rs6934720	0.86[ASN][1000 genomes]
rs73245914	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73245920	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73245926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73245927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73245940	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73788409	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs752398	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7769679	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs996300	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs996301	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs996302	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs996827	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv605232	chr6:164994771-165401154	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv521153	chr6:165279393-165343557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv605244	chr6:165293940-165330551	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
4	nsv886925	chr6:165319631-165705488	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165321000-165325800	Weak transcription	Fetal Brain Female	brain
2	chr6:165321400-165326000	Weak transcription	Fetal Brain Male	brain
3	chr6:165323800-165326400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:165324400-165326000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr6:165324600-165325800	Active TSS	Brain Cingulate Gyrus	brain
6	chr6:165324600-165325800	Active TSS	Brain Hippocampus Middle	brain
7	chr6:165324600-165325800	Active TSS	Brain Substantia Nigra	brain
8	chr6:165324800-165325600	Active TSS	Right Ventricle	heart
9	chr6:165324800-165325800	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:165324800-165325800	Active TSS	Brain Angular Gyrus	brain
11	chr6:165324800-165325800	Active TSS	Brain Anterior Caudate	brain
12	chr6:165324800-165325800	Active TSS	Right Atrium	heart
13	chr6:165324800-165326000	Active TSS	Brain Inferior Temporal Lobe	brain
14	chr6:165324800-165326000	Active TSS	Stomach Smooth Muscle	stomach
15	chr6:165324800-165326200	Enhancers	Adipose Nuclei	Adipose
16	chr6:165325000-165325800	Active TSS	Duodenum Smooth Muscle	Duodenum
17	chr6:165325200-165325600	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr6:165325200-165325600	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr6:165325200-165326000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
20	chr6:165325200-165326400	Enhancers	Fetal Stomach	stomach
21	chr6:165325400-165325600	Flanking Active TSS	Colon Smooth Muscle	Colon
22	chr6:165325400-165325600	Flanking Active TSS	Psoas Muscle	Psoas
23	chr6:165325400-165325600	Active TSS	HSMMtube	muscle
24	chr6:165325400-165325800	Flanking Active TSS	Brain Germinal Matrix	brain
25	chr6:165325400-165325800	Active TSS	Fetal Muscle Trunk	muscle
26	chr6:165325400-165325800	Enhancers	Left Ventricle	heart
27	chr6:165325400-165325800	Active TSS	Skeletal Muscle Female	skeletal muscle
28	chr6:165325400-165326000	Enhancers	H1 Cell Line	embryonic stem cell
29	chr6:165325400-165326200	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr6:165325400-165326200	Enhancers	Fetal Heart	heart
31	chr6:165325400-165326200	Enhancers	HSMM	muscle
32	chr6:165325400-165326400	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr6:165325400-165326400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr6:165325400-165326800	Enhancers	Fetal Muscle Leg	muscle

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