Variant report

Variant	rs11759373
Chromosome Location	chr6:128226775-128226776
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12194062	1.00[CHD][hapmap];0.87[LWK][hapmap]
rs12208599	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12216016	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs156062	1.00[CHD][hapmap]
rs269999	1.00[CHD][hapmap]
rs270002	1.00[CHD][hapmap];0.80[MKK][hapmap]
rs270003	1.00[CHD][hapmap]
rs270011	1.00[CHD][hapmap]
rs270015	1.00[CHD][hapmap]
rs4573107	1.00[CHD][hapmap]
rs490008	1.00[CHD][hapmap]
rs564461	1.00[CHD][hapmap]
rs6569519	1.00[CHD][hapmap]
rs6921729	1.00[CHD][hapmap]
rs699416	1.00[CHD][hapmap]
rs699417	1.00[CHD][hapmap]
rs9321104	1.00[CHD][hapmap]
rs9398863	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1024516	chr6:128184182-128298278	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128222600-128228600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:128222800-128226800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr6:128222800-128227000	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr6:128223600-128228600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr6:128224000-128235600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr6:128224400-128228600	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr6:128225600-128228600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr6:128225600-128232800	Weak transcription	Fetal Thymus	thymus
9	chr6:128226400-128226800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
10	chr6:128226400-128226800	Active TSS	Primary T killer memory cells from peripheral blood	blood
11	chr6:128226400-128228200	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr6:128226600-128227800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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