Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11759373	1.00[CHD][hapmap];0.87[LWK][hapmap]
rs12201026	1.00[CHD][hapmap]
rs12216016	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs156062	1.00[CHD][hapmap]
rs269999	1.00[CHD][hapmap]
rs270002	1.00[CHD][hapmap];0.80[MKK][hapmap];1.00[YRI][hapmap]
rs270003	1.00[CHD][hapmap]
rs270011	1.00[CHD][hapmap]
rs270015	1.00[CHD][hapmap]
rs270023	0.81[EUR][1000 genomes]
rs270051	0.81[EUR][1000 genomes]
rs270052	0.83[EUR][1000 genomes]
rs451472	0.81[EUR][1000 genomes]
rs490008	1.00[CHD][hapmap]
rs564461	1.00[CHD][hapmap]
rs6569519	1.00[CHD][hapmap]
rs6921729	1.00[CHD][hapmap]
rs699416	1.00[CHD][hapmap]
rs699417	1.00[CHD][hapmap]
rs7749132	1.00[YRI][hapmap]
rs9321104	1.00[CHD][hapmap]
rs9398863	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830799	chr6:128033100-128194511	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1024516	chr6:128184182-128298278	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
QRS duration	23534349	GWAS catalog

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128191400-128198800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:128191600-128198600	Weak transcription	Thymus	Thymus
3	chr6:128192800-128197200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr6:128193200-128195400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr6:128193400-128198200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr6:128193800-128195200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
7	chr6:128193800-128197800	Strong transcription	Fetal Thymus	thymus
8	chr6:128194000-128195200	ZNF genes & repeats	Primary T cells from cord blood	blood
9	chr6:128194000-128195400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
10	chr6:128194000-128197000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr6:128194200-128194600	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
12	chr6:128194200-128196200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:128194400-128195200	Strong transcription	Primary T helper naive cells from peripheral blood	blood

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